PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Basic Information? help Back to Top

TF ID

PSME_00007590-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

G2-like

Protein Properties

Length: 302aa MW: 33842.8 Da PI: 7.2481

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00007590-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.5	2.6e-32	19	72	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv ave LGG +kAtPk +l++m+vkgLt++hvkSHLQ+YR+ PSME_00007590-RA 19 PRLRWTPNLHQCFVTAVEGLGGRDKATPKLVLQMMNVKGLTISHVKSHLQMYRT 72 8****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.9E-31	15	72	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.475	15	75	IPR017930	Myb domain
SuperFamily	SSF46689	6.09E-15	17	73	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-23	19	73	IPR006447	Myb domain, plants
Pfam	PF00249	4.2E-8	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
METCERNGLV RQYLRSKVPR LRWTPNLHQC FVTAVEGLGG RDKATPKLVL QMMNVKGLTI 60 SHVKSHLQMY RTGKNNQSNH ESQIQKCQKQ SITDSQKQRL TDDDGAEHLY SDFSKTSTCS 120 SVYSFGTTPA TRLLSGEMDS FIMASDRSTL DYANSIEQHP TCSDSIQAGS HGLTMEEASA 180 ATDNCNKGNS DCRSQTSLKG NEVEHLVHFL LLRHEQSKAM NEVQETLRFP SELQLTGRLC 240 QGNGKSENEN LYNETVDITN LSLSISTAYN KMKASCPRER GLLSSKYNSF QDQNDIKLDL 300 TI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-19	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-19	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-19	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-19	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-19	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-19	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-19	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-19	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	7e-32	G2-like family protein