PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

PSME_00005591-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

G2-like

Protein Properties

Length: 477aa MW: 54119.2 Da PI: 9.3856

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00005591-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	40.6	5.5e-13	262	288	25	51
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQ 51 +AtPk +l+lm+vkgLt++hvkSHLQ PSME_00005591-RA 262 RRATPKLVLQLMDVKGLTIAHVKSHLQ 288 59************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52540	7.42E-24	11	180	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Gene3D	G3DSA:3.40.50.300	3.6E-24	18	175	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00005	4.0E-8	18	115	IPR003439	ABC transporter-like
TIGRFAMs	TIGR01557	1.3E-7	262	289	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	6.9E-11	262	288	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005524	Molecular Function	ATP binding
GO:0016887	Molecular Function	ATPase activity

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MEKYLANPIQ WIGKSFDKSM KRRTGFSTQD DVLYPHLTVR ETLTYMGSSQ AAQNLIQIRE 60 EKSYSVIVEL GLNSCGNTLI GPLLRGVSIG ERKIVSIGQE MLINPSRLLL DEPTSDLDPT 120 TAQRIISTLQ NLAKGGRTVI TTIHHPLSRL YHMSNKVILL SEVNPIYYGH VSEAVSYFSS 180 IGFAPSLAMN PVDFMLDLSN GITSNIRLVN LSSEEAESQS RLGHELQNLV RQSLITSYRK 240 NLDTKLKTEV NIEQNYLDTK YRRATPKLVL QLMDVKGLTI AHVKSHLQVG VGLQSKNMEG 300 RDHLLDYYYI LGQAYNYLKI GVKWGKKQEE VKYSILETPF IGLSDKNLQP APVKCNEPIT 360 IDLEQKSLPF QLQRRTTVAA KRKADFGNSR IKLYLTERKK KTKEPNLQMM LKHADDQDQA 420 WSEEEVDSSL SLSLFSKYQE KETESLKLAT SRENKPEPKT FCSKQILIPI NHLESVL

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MEKYLANPIQ WIGKSFDKSM KRRTGFSTQD DVLYPHLTVR ETLTYMGSSQ AAQNLIQIRE  60
EKSYSVIVEL GLNSCGNTLI GPLLRGVSIG ERKIVSIGQE MLINPSRLLL DEPTSDLDPT  120
TAQRIISTLQ NLAKGGRTVI TTIHHPLSRL YHMSNKVILL SEVNPIYYGH VSEAVSYFSS  180
IGFAPSLAMN PVDFMLDLSN GITSNIRLVN LSSEEAESQS RLGHELQNLV RQSLITSYRK  240
NLDTKLKTEV NIEQNYLDTK YRRATPKLVL QLMDVKGLTI AHVKSHLQVG VGLQSKNMEG  300
RDHLLDYYYI LGQAYNYLKI GVKWGKKQEE VKYSILETPF IGLSDKNLQP APVKCNEPIT  360
IDLEQKSLPF QLQRRTTVAA KRKADFGNSR IKLYLTERKK KTKEPNLQMM LKHADDQDQA  420
WSEEEVDSSL SLSLFSKYQE KETESLKLAT SRENKPEPKT FCSKQILIPI NHLESVL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5do7_B	1e-33	29	200	155	328	ATP-binding cassette sub-family G member 8
5do7_D	1e-33	29	200	155	328	ATP-binding cassette sub-family G member 8
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	380	400	KRKADFGNSRIKLYLTERKKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015895759.1	4e-79	ABC transporter G family member 21
Swissprot	Q9C6W5	9e-78	AB14G_ARATH; ABC transporter G family member 14
TrEMBL	A0A0C9S664	1e-85	A0A0C9S664_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_15471_2810 transcribed RNA sequence
TrEMBL	A0A0D6R4J2	9e-87	A0A0D6R4J2_ARACU; Uncharacterized protein
STRING	Lus10033315	3e-80	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	9e-10	G2-like family protein

Publications ? help Back to Top
Sánchez-Fernández R,Davies TG,Coleman JO,Rea PA The Arabidopsis thaliana ABC protein superfamily, a complete inventory. J. Biol. Chem., 2001. 276(32): p. 30231-44 [PMID:11346655] Garcia O,Bouige P,Forestier C,Dassa E Inventory and comparative analysis of rice and Arabidopsis ATP-binding cassette (ABC) systems. J. Mol. Biol., 2004. 343(1): p. 249-65 [PMID:15381434] Sugiyama A, et al. Genome-wide analysis of ATP-binding cassette (ABC) proteins in a model legume plant, Lotus japonicus: comparison with Arabidopsis ABC protein family. DNA Res., 2006. 13(5): p. 205-28 [PMID:17164256] Verrier PJ, et al. Plant ABC proteins--a unified nomenclature and updated inventory. Trends Plant Sci., 2008. 13(4): p. 151-9 [PMID:18299247] Le Hir R, et al. ABCG9, ABCG11 and ABCG14 ABC transporters are required for vascular development in Arabidopsis. Plant J., 2013. 76(5): p. 811-24 [PMID:24112720] Zhang K, et al. Arabidopsis ABCG14 protein controls the acropetal translocation of root-synthesized cytokinins. Nat Commun, 2014. 5: p. 3274 [PMID:24513716] Ko D, et al. Arabidopsis ABCG14 is essential for the root-to-shoot translocation of cytokinin. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(19): p. 7150-5 [PMID:24778257] Borghi L,Kang J,Ko D,Lee Y,Martinoia E The role of ABCG-type ABC transporters in phytohormone transport. Biochem. Soc. Trans., 2015. 43(5): p. 924-30 [PMID:26517905] Zwack PJ, et al. Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress. Plant Physiol., 2016. 172(2): p. 1249-1258 [PMID:27550996] Wang S, et al. A Role of Cytokinin Transporter in Arabidopsis Immunity. Mol. Plant Microbe Interact., 2017. 30(4): p. 325-333 [PMID:28398838]