PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00002554-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 334aa    MW: 37412.3 Da    PI: 6.0688
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00002554-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-09145188755
                       HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         Er+RR+++++ + +Lr+++P+ +      K++K +i++ A+ Y+ +Lq
  PSME_00002554-RA 145 HTERKRRNKLKETLYKLRSVVPNiS------KMDKQSIVRDAISYMLDLQ 188
                       57*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.28E-11137192No hitNo description
PROSITE profilePS5088814.627138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-15142205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-10144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-7145188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-14146205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
FVRGRIGEMD FIGFDSMKEL CKSEINQYSK GNVFGHGFPL EAMSNIVSAG LYENLSGQTS  60
TYSEPKTVES QTDQNTAISV CSEVFPMDHQ NSKLWMDMDE NSGQFDWDDN DSEIIGSNPA  120
ATQTYNSNGR VVQCQQRCQT SKNLHTERKR RNKLKETLYK LRSVVPNISK MDKQSIVRDA  180
ISYMLDLQKK VQEIEAEIQA LSSSNRSADY SQVITSETTK PLSNANCESL KSVDKKKSAN  240
NFIKQGKVLE VDICDVGEGG IYHVRIQMKK EDGVLVKLTR ALESLPLHII NSNICCLDEA  300
IFFTLTLDGS SVKIVGANKL KDMIRQTIES LNTC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LRN61e-90B8LRN6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.22e-25bHLH family protein