PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Binding Motif |

Regulation |

Basic Information? help Back to Top

TF ID

PSME_00001409-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 799aa MW: 92440 Da PI: 6.5941

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00001409-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.6	3e-50	29	155	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPt+eel+ +yL++kvegk++++ e i++vd+y+++Pw+Lp+ + ++ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ v PSME_00001409-RA 29 LMPGFRFHPTEEELIEFYLRRKVEGKHFNI-ELITSVDLYRYDPWELPALACTGEKEWFFYVQRDRKYRNGDRPNRVTTSGYWKATGADRMVR 120 689*************************.89***********7777899************************************ PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++ +glkktLvfykg+apkg++t W+m+eyrl PSME_00001409-RA 121 NEVSRCIGLKKTLVFYKGKAPKGKRTGWIMNEYRL 155 9999***************************98 PP
2	NAM	160	9.1e-50	479	605	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPt+eelv +yL++kvegk++++ e i++v++y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + PSME_00001409-RA 479 LMPGFRFHPTEEELVEFYLRRKVEGKHFHI-ELIASVHLYQYDPWELPALATIGEKEWFFYVQRDRKYKNGDRPNRVTTSGYWKATGADRMIR 570 689*************************.89***********8778899************************************ PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++ +glkktLvfykg+apkg++t+W+m+eyrl PSME_00001409-RA 571 NEVSRCIGLKKTLVFYKGKAPKGKRTSWLMNEYRL 605 9999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-55	21	176	IPR003441	NAC domain
PROSITE profile	PS51005	55.66	29	176	IPR003441	NAC domain
Pfam	PF02365	1.7E-24	31	155	IPR003441	NAC domain
SuperFamily	SSF101941	5.23E-54	469	626	IPR003441	NAC domain
PROSITE profile	PS51005	54.831	479	626	IPR003441	NAC domain
Pfam	PF02365	3.6E-24	481	605	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 799 aa Download sequence Send to blast
MNLPRSSSSM KDKDWKTDES TFKHDQDVLM PGFRFHPTEE ELIEFYLRRK VEGKHFNIEL 60 ITSVDLYRYD PWELPALACT GEKEWFFYVQ RDRKYRNGDR PNRVTTSGYW KATGADRMVR 120 NEVSRCIGLK KTLVFYKGKA PKGKRTGWIM NEYRLPQLET QRSQKSELSL CRVYKKAGGS 180 EEGRQKAKER HNRTENHEMQ ECASKHQCQT YTACSNPRTT GESCNFEIKE NSTEEIVKLE 240 ESPTHIKIMP KSIIEVQRYP AHMEYGVPYQ SENIREHIYS DGGNVWGTVS RPIALNEDLG 300 PSLSTCLMCS RAPGQLAMAE NLYNNNPSNL VLTNALTYGA CLSTCSDKLW ETEWNPEWAG 360 MDQCQSCMSC SSPRMTAESC NFEIKAGSPV EIVKFEELAN DIETMPKSRN QLAMAEDLYN 420 HNSSYLFLTN ALTYGTCLQT CSDKLWEWNP MNLPTSSCNM KDKDWKTDES NFKHNQDFLM 480 PGFRFHPTEE ELVEFYLRRK VEGKHFHIEL IASVHLYQYD PWELPALATI GEKEWFFYVQ 540 RDRKYKNGDR PNRVTTSGYW KATGADRMIR NEVSRCIGLK KTLVFYKGKA PKGKRTSWLM 600 NEYRLPQLET YSIQKNELSL CRVYRRSGRS EEGLLESKER HNGTEIDRIT VNENHVESCS 660 VEMQESASMH QWQTYMACSN PRTTAESCDV KTMPELISGQ ERFPASVEYR ASDPSENTRE 720 RIYSQGENVW SIVSRPISLN EDLELSLATC LIFPRTPNQL GVTENLCIND DPSYLNVSNA 780 STNGACLQTY SDKLWDWNL

Sequence ? help Back to Top

Protein Sequence Length: 799 aa Download sequence Send to blast

MNLPRSSSSM KDKDWKTDES TFKHDQDVLM PGFRFHPTEE ELIEFYLRRK VEGKHFNIEL  60
ITSVDLYRYD PWELPALACT GEKEWFFYVQ RDRKYRNGDR PNRVTTSGYW KATGADRMVR  120
NEVSRCIGLK KTLVFYKGKA PKGKRTGWIM NEYRLPQLET QRSQKSELSL CRVYKKAGGS  180
EEGRQKAKER HNRTENHEMQ ECASKHQCQT YTACSNPRTT GESCNFEIKE NSTEEIVKLE  240
ESPTHIKIMP KSIIEVQRYP AHMEYGVPYQ SENIREHIYS DGGNVWGTVS RPIALNEDLG  300
PSLSTCLMCS RAPGQLAMAE NLYNNNPSNL VLTNALTYGA CLSTCSDKLW ETEWNPEWAG  360
MDQCQSCMSC SSPRMTAESC NFEIKAGSPV EIVKFEELAN DIETMPKSRN QLAMAEDLYN  420
HNSSYLFLTN ALTYGTCLQT CSDKLWEWNP MNLPTSSCNM KDKDWKTDES NFKHNQDFLM  480
PGFRFHPTEE ELVEFYLRRK VEGKHFHIEL IASVHLYQYD PWELPALATI GEKEWFFYVQ  540
RDRKYKNGDR PNRVTTSGYW KATGADRMIR NEVSRCIGLK KTLVFYKGKA PKGKRTSWLM  600
NEYRLPQLET YSIQKNELSL CRVYRRSGRS EEGLLESKER HNGTEIDRIT VNENHVESCS  660
VEMQESASMH QWQTYMACSN PRTTAESCDV KTMPELISGQ ERFPASVEYR ASDPSENTRE  720
RIYSQGENVW SIVSRPISLN EDLELSLATC LIFPRTPNQL GVTENLCIND DPSYLNVSNA  780
STNGACLQTY SDKLWDWNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-51	26	632	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-51	26	632	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-51	26	632	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-51	26	632	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-51	26	632	17	174	NAC domain-containing protein 19
3swm_B	2e-51	26	632	17	174	NAC domain-containing protein 19
3swm_C	2e-51	26	632	17	174	NAC domain-containing protein 19
3swm_D	2e-51	26	632	17	174	NAC domain-containing protein 19
3swp_A	2e-51	26	632	17	174	NAC domain-containing protein 19
3swp_B	2e-51	26	632	17	174	NAC domain-containing protein 19
3swp_C	2e-51	26	632	17	174	NAC domain-containing protein 19
3swp_D	2e-51	26	632	17	174	NAC domain-containing protein 19
4dul_A	2e-51	26	632	14	171	NAC domain-containing protein 19
4dul_B	2e-51	26	632	14	171	NAC domain-containing protein 19

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00257	DAP	Transfer from AT2G02450	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	9e-88	NAC domain containing protein 35