PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

PSME_00000215-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 359aa MW: 41509.9 Da PI: 6.9118

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00000215-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.2	9.1e-11	179	223	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++Er+RR+++++ f+ L +llP+ K +K +iL + +YI++L PSME_00000215-RA 179 HMIAERKRRNQLKQQFSLLHSLLPQK-----SKRDKYSILSATFRYISDL 223 7899*******************7.....6**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.28E-14	174	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.697	174	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.71E-8	178	225	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.2E-12	178	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-8	179	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.0E-7	180	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
LNPTMEINGD FNWSPVMASS ASGMMIQSNG QNFGSRNINA DSMPIIDEAS FELLPLYNTS 60 ETSWYSSSSE DMEAFCHFNL CNISNGHSHP QSFNVANNII STPQNSTLYR ESAFVSYIRT 120 YTQSLYVKND TDNLMKRCFK FLRKIDEKRR EVQRLSEVAN IQEHDQFNAS LQSESAFHHM 180 IAERKRRNQL KQQFSLLHSL LPQKSKRDKY SILSATFRYI SDLKHRGSEL EQRNRALEES 240 LRIHISKKEG CSSSDQRHEE PQETLIYSSD EVVLEQSKLI PNQVDIRINV QIDPLSSPTS 300 LIIVLLKRLK ELQLNVVLVQ YNVQGYKLEA HLLLTPIEGN EWESFKWENV AKLVKWTLI

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

LNPTMEINGD FNWSPVMASS ASGMMIQSNG QNFGSRNINA DSMPIIDEAS FELLPLYNTS  60
ETSWYSSSSE DMEAFCHFNL CNISNGHSHP QSFNVANNII STPQNSTLYR ESAFVSYIRT  120
YTQSLYVKND TDNLMKRCFK FLRKIDEKRR EVQRLSEVAN IQEHDQFNAS LQSESAFHHM  180
IAERKRRNQL KQQFSLLHSL LPQKSKRDKY SILSATFRYI SDLKHRGSEL EQRNRALEES  240
LRIHISKKEG CSSSDQRHEE PQETLIYSSD EVVLEQSKLI PNQVDIRINV QIDPLSSPTS  300
LIIVLLKRLK ELQLNVVLVQ YNVQGYKLEA HLLLTPIEGN EWESFKWENV AKLVKWTLI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63650.3	8e-11	bHLH family protein