PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

PSME_00000062-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

WOX

Protein Properties

Length: 323aa MW: 36045.9 Da PI: 6.3455

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00000062-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.8	1.6e-17	51	111	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++ ql++Le+l+ + +p++++ +e++ +l +++e++V++WFqNr+a+ k+ PSME_00000062-RA 51 RQRWTPSQPQLQILETLYDRgICTPNKHKLKEITGELslhgSISETNVYNWFQNRKARAKR 111 89***************99***************99***************97 PP
2	Wus_type_Homeobox	91.1	1e-29	50	113	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtP++ Q++iLe+ly++G+ tPnk+++++it eL+ +G i+++NV++WFQNrkaR ++k+ PSME_00000062-RA 50 ARQRWTPSQPQLQILETLYDRGICTPNKHKLKEITGELSLHGSISETNVYNWFQNRKARAKRKR 113 689**********************************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-12	45	115	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.98E-14	46	115	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.779	47	112	IPR001356	Homeobox domain
SMART	SM00389	6.4E-10	49	116	IPR001356	Homeobox domain
CDD	cd00086	1.81E-8	51	113	No hit	No description
Pfam	PF00046	2.8E-15	51	111	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MGETTFLEDV RLVCLAGHCG CPRHFSVPNQ GGEHILYDLA VAGSGFRPSA RQRWTPSQPQ 60 LQILETLYDR GICTPNKHKL KEITGELSLH GSISETNVYN WFQNRKARAK RKRQLLPQKE 120 GESEADTDGD SSREKKPKTD DEFNKEDAGY GEKNADAPEK SHGIYLRGSG QAEAKLQMHE 180 RNHDMSNIGL RHVDKDAQLF EKNYSVVNYK THANDQQQFD GTRENVSSSL LFFQTEADPH 240 GDTSLERTGN AALVSTENNQ QGSRVMTVLL DGKQFEVPAG VVDVRRTFGD NAILLDSHGH 300 VVPTNDVGMT FHPLHGSESY TLL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2I4KAP4	1e-171	A0A2I4KAP4_PINTA; WUSCHEL homeobox protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20700.1	5e-22	WUSCHEL related homeobox 14