PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00000014-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 520aa    MW: 55999.4 Da    PI: 7.5516
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00000014-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.3e-09340388355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  PSME_00000014-RA 340 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 388
                       58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.64E-11335392No hitNo description
SuperFamilySSF474595.37E-17335406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485337387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-17338406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-6340388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10343393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MGDQEKSAFV NFQTAGYSSS SATMNPVITE SSSKASALQN AKCSLPNPSY FSWDSSMIMQ  60
SKGAMGSSSL MNNACEPKNN GSHDIAIGRL VGSSCSLPQR SSVAWNAPKG GILATQNISQ  120
LSSDNGFAER AARLSCFGVG GGSLNLSESA GAPFHRSVID NSAMSRIPRP NMAELTKVSD  180
TSLSKEEVCA AETGVRKAGR LSRSSTPGHG TSGNESDDAE VSTAHEESSS SDQNTSEAAP  240
NAFNGRKRKQ MQKDKGKDFA SLQAEKETQI TEAIDGLKGM KYKTVEGVKE KDDVKYKVEQ  300
NASAKTGEGS PKQAKDNIQT SEPPKEDYIH VRARRGQATN SHSLAERVRR EKISERMKFL  360
QDLVPGCSKV TGKAVMLDEI INYVQSLQRQ VEFLSMKLAA VNPRMEFNVE GILAKDMLQS  420
QGSSPTMVFA SDTSTSYPQL HQPQQGLVQI GTEGHGIVNQ AEALRRTINA QIACIDGYGD  480
VNAQLSHVWD NELQSVVQMG FVQNNHTPLT SQGNSDKLKI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1131510.0BT113151.1 Picea glauca clone GQ03326_F21 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010654187.11e-109PREDICTED: transcription factor bHLH49 isoform X1
RefseqXP_010654195.11e-109PREDICTED: transcription factor bHLH49 isoform X1
RefseqXP_010654202.11e-109PREDICTED: transcription factor bHLH49 isoform X1
RefseqXP_010654208.11e-109PREDICTED: transcription factor bHLH49 isoform X1
RefseqXP_019076890.11e-109PREDICTED: transcription factor bHLH49 isoform X1
TrEMBLB8LLM21e-147B8LLM2_PICSI; Uncharacterized protein
STRINGERN100311e-107(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-70bHLH family protein