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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PK29811.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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| Family | LBD | ||||||||
| Protein Properties | Length: 136aa MW: 14565.2 Da PI: 4.7012 | ||||||||
| Description | LBD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF260 | 33.1 | 1.6e-10 | 2 | 42 | 57 | 97 |
DUF260 57 amsslvyeAearardPvyGavgvilklqqqleqlkaelall 97
+++sl+yeA r+ +Pv+Gavg+++ ++++++q+++e++l+
PK29811.1 2 LFQSLLYEAVGRTVNPVNGAVGLLWMGNWHVCQAAVETVLR 42
799********************************999876 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50891 | 8.749 | 1 | 46 | IPR004883 | Lateral organ boundaries, LOB |
| Pfam | PF03195 | 9.3E-7 | 2 | 40 | IPR004883 | Lateral organ boundaries, LOB |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 136 aa Download sequence Send to blast |
ALFQSLLYEA VGRTVNPVNG AVGLLWMGNW HVCQAAVETV LRGGALGTLS ESSSADHPTV 60 SRRRWPKKRP CSTVNNFDEG TSDPYGLEPS DLDLCLMAAG TKMEKKISRE VSPTSEEGSE 120 TTTLGSNSVD SDTYLG |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_007199277.1 | 7e-32 | LOB domain-containing protein 38 | ||||
| TrEMBL | A0A2P5DNE7 | 2e-42 | A0A2P5DNE7_PARAD; Lateral organ boundaries domain containing protein | ||||
| STRING | EMJ00476 | 3e-31 | (Prunus persica) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF721 | 34 | 136 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G49940.1 | 4e-25 | LOB domain-containing protein 38 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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