PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK29723.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family SBP
Protein Properties Length: 840aa    MW: 93771 Da    PI: 6.8511
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK29723.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP115.82.3e-36159234176
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                +Cqv++C +d++e+k yhrrh+vC  +++a++v+++g+++r+CqqC++fh l +fDe+krsCrr+L+khn+rrr+k
  PK29723.1 159 RCQVPDCGVDIKELKGYHRRHRVCLRCANATTVTIDGETKRYCQQCGKFHVLADFDEGKRSCRRKLEKHNNRRRRK 234
                6***********************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.2E-28153221IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.017157234IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.88E-33158236IPR004333Transcription factor, SBP-box
PfamPF031104.2E-27160234IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    Send to blast
MEGAGSPSSS YSQPQASERF RGSDMEVARA PSLHDDGSNI WDWGDLLDFT VDDADLAINW  60
ASNPARQQSQ TSGVEEQQHQ LLVPPTTTST AEEEEEGHNS DPGRVRKRDP RMVCSNFLAG  120
LVPCACPEMD EKLMEMEEEE AGHGKKRART VRASSGVARC QVPDCGVDIK ELKGYHRRHR  180
VCLRCANATT VTIDGETKRY CQQCGKFHVL ADFDEGKRSC RRKLEKHNNR RRRKPAGSKG  240
ANEKESQGDI PSEDVSGGDG EAGKDCSQFS SQRIQTETFV ESEDGHISPL RSGPDSKDAN  300
SDGFLSLVDS GENQMEGGKD NSKRGVSPSY WDNKSTYSSM CPTGRISFKL YDWNPAEFPR  360
RLRHQIFQWL SNMPVELEGY IRPGCIILTV FVAMPRFMWM KLLEDPKSYV HNFVATPGGM  420
LSGRGNILVY LNNMMFYVVK DGTSVIKAKV DVQAPKLHYV HPTCFEAGKP MEFVACGSNL  480
LLPKLRFLLS FSGKYLACAY SPASSHSVTD GNTTSSFDHQ LYRIQVPRTE ANCFGPVFIE  540
VENEGGLSNF IPLLIGDKET CSEMNVIQQR HNESHFSERP YLTSVGSPSN LCEVSCQRHT  600
AFSEIMLEIA WLLKKPGSEN SQPIVTTSQI QRLNYLLNFL ISIESFTILE KVLQNLRTVV  660
NKMESNASCN GINEADLKLL QKYMDYAHQL PSQKPQEAAN LDLNSRNSLL QVDHGSQSCS  720
QNDPCSIGSF PGQDMEIMVN GKSGFMEDST YNKRIETISL LDRETILKAN RKKEWPSDSV  780
CRVSYGQVLS SRRRVILGFR PTLLVIATAA VCVGICSVLF HPQKVSEFAI SIRRCLLNKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A1e-40157240386squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220232RRKLEKHNNRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024027509.10.0squamosa promoter-binding-like protein 7
TrEMBLA0A2P5E3Z40.0A0A2P5E3Z4_PARAD; SBP-box transcription factor
STRINGXP_010105670.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64703450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.10.0squamosa promoter binding protein-like 7