PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK29640.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WRKY
Protein Properties Length: 129aa    MW: 14735.1 Da    PI: 8.6774
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK29640.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.26.1e-3268126159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDg++WrKYG+K+vk+s++pr+YYrC+  gCpvkk+ver++edp +v++tYeg Hnh+
  PK29640.1  68 LDDGFKWRKYGKKMVKNSPNPRNYYRCSVDGCPVKKRVERDREDPMYVITTYEGVHNHQ 126
                59********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-3354126IPR003657WRKY domain
SuperFamilySSF1182901.16E-2862126IPR003657WRKY domain
PROSITE profilePS5081130.28563128IPR003657WRKY domain
SMARTSM007742.3E-3768127IPR003657WRKY domain
PfamPF031064.1E-2569126IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
XDHPAISQSQ SQSQPMLSNP VTYATDEIGG SSSHLGGHNT GENVQSGQER REVRERVAFK  60
IKSEIEILDD GFKWRKYGKK MVKNSPNPRN YYRCSVDGCP VKKRVERDRE DPMYVITTYE  120
GVHNHQSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-2558125774Probable WRKY transcription factor 4
2lex_A3e-2558125774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010091969.12e-58probable WRKY transcription factor 50
SwissprotQ8VWQ52e-43WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLW9R0015e-57W9R001_9ROSA; Putative WRKY transcription factor 50
STRINGXP_010091969.18e-58(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.13e-45WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]