PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK29340.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

ERF

Protein Properties

Length: 131aa MW: 14338.4 Da PI: 11.2917

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK29340.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.7	6.9e-19	29	79	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g PK29340.1 29 PVYRGVRMRT-WGKWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAALSIKG 79 68***998.******854...59********************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	5.7E-13	29	79	IPR001471	AP2/ERF domain
SMART	SM00380	7.2E-36	30	93	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.051	30	87	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.5E-32	30	88	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.84E-22	30	88	IPR016177	DNA-binding domain
PRINTS	PR00367	1.6E-10	31	42	IPR001471	AP2/ERF domain
CDD	cd00018	6.04E-29	31	89	No hit	No description
PRINTS	PR00367	1.6E-10	53	69	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
XNNNNNNNSS SNNNSNNNNN NNNNNSKHPV YRGVRMRTWG KWVSEIREPR KKNRIWLGTF 60 STPEMAARAH DVAALSIKGN SAILNFPELA GSLPRPESNS PRDVQAAATK AALMEFPNPS 120 PSPSTSSSTT T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-21	18	87	2	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004501158.1	8e-59	dehydration-responsive element-binding protein 3
Refseq	XP_004517241.1	8e-59	dehydration-responsive element-binding protein 3-like
Refseq	XP_018823586.1	2e-58	PREDICTED: ethylene-responsive transcription factor TINY-like
Swissprot	Q9LYD3	2e-52	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A1S2YAA7	2e-57	A0A1S2YAA7_CICAR; dehydration-responsive element-binding protein 3
TrEMBL	A0A2I4EW11	4e-57	A0A2I4EW11_JUGRE; ethylene-responsive transcription factor TINY-like
STRING	XP_004501158.1	3e-58	(Cicer arietinum)
STRING	XP_004517241.1	3e-58	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	2e-50	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]