PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK29047.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | ERF | ||||||||
Protein Properties | Length: 72aa MW: 7577.32 Da PI: 11.7992 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.6 | 1.3e-12 | 36 | 69 | 2 | 39 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgta 39 +ykG+r +k +g+WvAeIr+p +kr r++lg++ ta PK29047.1 36 QYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTA 69 6******99.**********9...336********994 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.4E-17 | 35 | 70 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.961 | 36 | 72 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-7 | 36 | 70 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-6 | 36 | 72 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.69E-11 | 36 | 69 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.0E-6 | 37 | 48 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-6 | 59 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 72 aa Download sequence Send to blast |
METAGPPPRE TTRKRTAAGG GGGGGGGGGG GVGERQYKGI RMRKWGKWVA EIREPNKRSR 60 IWLGSYSTAV AX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009387797.1 | 3e-21 | PREDICTED: ethylene-responsive transcription factor RAP2-9-like | ||||
Swissprot | Q8W3M3 | 5e-19 | RAP29_ARATH; Ethylene-responsive transcription factor RAP2-9 | ||||
TrEMBL | A0A2P5D1L6 | 8e-20 | A0A2P5D1L6_TREOI; AP2/ERF domain containing protein | ||||
TrEMBL | A0A444F0S6 | 6e-20 | A0A444F0S6_ENSVE; Uncharacterized protein | ||||
TrEMBL | M0UCQ2 | 6e-20 | M0UCQ2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP26940_001 | 1e-20 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1290 | 32 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06746.1 | 7e-21 | related to AP2 9 |
Publications ? help Back to Top | |||
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