PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK29047.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 72aa    MW: 7577.32 Da    PI: 11.7992
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK29047.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.61.3e-123669239
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgta 39
               +ykG+r +k +g+WvAeIr+p   +kr r++lg++ ta
  PK29047.1 36 QYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTA 69
               6******99.**********9...336********994 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.4E-173570IPR001471AP2/ERF domain
PROSITE profilePS5103214.9613672IPR001471AP2/ERF domain
PfamPF008473.0E-73670IPR001471AP2/ERF domain
SMARTSM003805.5E-63672IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-113669IPR016177DNA-binding domain
PRINTSPR003671.0E-63748IPR001471AP2/ERF domain
PRINTSPR003671.0E-65972IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
METAGPPPRE TTRKRTAAGG GGGGGGGGGG GVGERQYKGI RMRKWGKWVA EIREPNKRSR  60
IWLGSYSTAV AX
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387797.13e-21PREDICTED: ethylene-responsive transcription factor RAP2-9-like
SwissprotQ8W3M35e-19RAP29_ARATH; Ethylene-responsive transcription factor RAP2-9
TrEMBLA0A2P5D1L68e-20A0A2P5D1L6_TREOI; AP2/ERF domain containing protein
TrEMBLA0A444F0S66e-20A0A444F0S6_ENSVE; Uncharacterized protein
TrEMBLM0UCQ26e-20M0UCQ2_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP26940_0011e-20(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06746.17e-21related to AP2 9
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]