PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

PK28796.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Dof

Protein Properties

Length: 195aa MW: 22326.1 Da PI: 10.4181

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK28796.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.4	4.3e-40	50	111	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k++a++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss PK28796.1 50 KDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 111 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-29	43	108	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.5E-34	51	108	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.003	54	108	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	56	92	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
XNNNNNNNKP RMELGSNNNN SSNDIIIKSN SNNNMLGSSD QRRNITRPQK DQAVNCPRCN 60 STNTKFCYYN NYSLTQPRYF CKTCRRYWTE GGSLRNVPVG GGSRKNKRSS SSSPSPLTTS 120 SPPSSSSSLQ TKKLHHHHDL LPLPFTFPNI ITHQQQQQQQ QQQQQQNPKS NQGQDLNLTF 180 PPQPSDHHYH HHHHH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023912132.1	9e-52	dof zinc finger protein 1-like isoform X1
Refseq	XP_023912133.1	6e-52	dof zinc finger protein 1-like isoform X2
Swissprot	Q8LAP8	1e-41	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A2P5DFE1	7e-49	A0A2P5DFE1_PARAD; Zinc finger transcription factor
STRING	VIT_16s0098g01420.t01	1e-46	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	2e-39	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]