PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK28774.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 295aa    MW: 32701.9 Da    PI: 8.4186
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK28774.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.9e-19178228255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+++AeIrdp  ng  +r++lg++ t eeAa a+++a+ k++g
  PK28774.1 178 HYRGVRQRP-WGKFAAEIRDPARNG--ARVWLGTYETSEEAALAYDRAAFKMRG 228
                7********.**********97676..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.0E-32177237IPR001471AP2/ERF domain
SMARTSM003808.8E-39178242IPR001471AP2/ERF domain
CDDcd000182.57E-32178237No hitNo description
PfamPF008477.0E-15178228IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-23178238IPR016177DNA-binding domain
PROSITE profilePS5103224.329178236IPR001471AP2/ERF domain
PRINTSPR003671.7E-13179190IPR001471AP2/ERF domain
PRINTSPR003671.7E-13218238IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
XNNPQLLYPN FSSSSSSSTS TSTSTITTDL MSPCLTDQWG DLPLQVNDSE DMIVYNSLRD  60
AVSFGWSPSD HYLTAAASVV KSEPYDYQYI YSFNQSSQLA GPPITAAECS LIPNNINQPR  120
NFQINGQDQI FDKYSGIIAP NVLLNIQNND NFNSEENKCR NNNIIGSNRK SSVARGRHYR  180
GVRQRPWGKF AAEIRDPARN GARVWLGTYE TSEEAALAYD RAAFKMRGSK ALLNFPHRIS  240
SGEPPPVRIT GKRRESETTT TTGSGGGSPK KMKVVRNSAE NNDVASKKEF DTFEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-39174243170ATERF1
3gcc_A8e-39174243170ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109127.12e-83ethylene-responsive transcription factor 2
TrEMBLA0A2P5F3R76e-90A0A2P5F3R7_TREOI; AP2/ERF transcription factor
STRINGXP_010109127.16e-83(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1691658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.12e-43ethylene responsive element binding factor 1