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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK28616.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | WRKY | ||||||||
Protein Properties | Length: 159aa MW: 18476.6 Da PI: 9.336 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 40.1 | 7.1e-13 | 135 | 159 | 2 | 26 |
--SS-EEEEEEE--TT-SS-EEEEE CS WRKY 2 dDgynWrKYGqKevkgsefprsYYr 26 dDgy+WrKYGqK++ g+++prsYYr PK28616.1 135 DDGYSWRKYGQKDILGAKYPRSYYR 159 8***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.0E-12 | 127 | 159 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.184 | 129 | 159 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-10 | 133 | 159 | IPR003657 | WRKY domain |
SMART | SM00774 | 0.0065 | 134 | 159 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.6E-10 | 135 | 159 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MEGNWSWEQK ILISELVQGM ELAKQLKQNI CSQALPENRE FLVQRILSSY EKALSILKWG 60 GGQQHQQQQQ QPLRVATSVS LPESPISNNE SPQSENFDRP FKDHHQDSSK KRKTLPRWTD 120 QVRVSSENGL EGPQDDGYSW RKYGQKDILG AKYPRSYYR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:20409006). May regulate the early events of leaf senescence (PubMed:17369373, PubMed:20409006). Negatively regulates the expression of ESR/ESP (PubMed:20409006). Together with WRKY46 and WRKY70, promotes resistance to P.syringae, probably by enhancing salicylic acid (SA)- dependent genes. Contributes to the suppression of jasmonic acid (MeJA)-induced expression of PDF1.2 (PubMed:22325892). {ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:20409006, ECO:0000269|PubMed:22325892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) (PubMed:22268143, PubMed:22325892). Strong accumulation during leaf senescence (PubMed:22268143). Down-regulated by jasmonate. Triggered by P.syringae (PubMed:22325892). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11506370, ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22325892}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010104968.1 | 6e-72 | probable WRKY transcription factor 53 | ||||
Swissprot | Q9SUP6 | 1e-38 | WRK53_ARATH; Probable WRKY transcription factor 53 | ||||
TrEMBL | A0A2P5EAA8 | 2e-81 | A0A2P5EAA8_TREOI; WRKY domain containing protein | ||||
STRING | XP_010104968.1 | 2e-71 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF493 | 34 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 1e-40 | WRKY family protein |