PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK28391.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 317aa    MW: 36513 Da    PI: 7.0274
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK28391.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.5e-1470121155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i+  A+e++k+L+
  PK28391.1  70 QRMTHIAVERNRRKQMNEHLAVLRSLMPDS---YVQRGDQASIVGGAIEFVKELE 121
                79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-1668135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1368124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.88E-1368125No hitNo description
PROSITE profilePS5088815.12369120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-1170121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-1075126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
NKELGQGQGH NNGDRMMMMM MMRTRARRRF QEQEQEQEQE RRNNNLGGVV RKKRKRKPRV  60
CKNKEEAETQ RMTHIAVERN RRKQMNEHLA VLRSLMPDSY VQRGDQASIV GGAIEFVKEL  120
EHLLQSLEAQ KLQAMNTNSN NNNNNNNSGE QPMVDNANAN ANDKDNDNDN DDDHHDDKDD  180
EMVAHHHHHH DHQRAAPFAQ FFVYPQYTWS QISNKYTSKT KAAIADIEVT LIETHASLRI  240
FTRRSPRQLS NLIAGFQSLH LTVLHLNLTT LNPFVLYSLS LKVEEGCLLS SVDDIAAAVH  300
HMLTIIIEEE TTMPMCC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15055RKKRKR
25056RKKRKRK
35156KKRKRK
47081RMTHIAVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN6460801e-119FN646080.1 Humulus lupulus mRNA for basic helix-loop-helix transcription factor (bHLH1 gene), cultivar Osvald's 72, clone 2512.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010096553.11e-117transcription factor bHLH71
RefseqXP_023923169.11e-117transcription factor bHLH71-like
TrEMBLE3PA311e-127E3PA31_HUMLU; Basic helix-loop-helix transcription factor
STRINGXP_010096553.11e-116(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.12e-57beta HLH protein 71