PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK28347.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NAC
Protein Properties Length: 181aa    MW: 20591.1 Da    PI: 10.2852
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK28347.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.73.3e-21149257128
        NAM  57 ewyfFskrdkkyatgkrknratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                  +fF++ +k+y+tg+rk+r+++      + +W++tgk+++v++ +g+++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  PK28347.2  14 VRHFFHRPSKAYTTGTRKRRKVHtdeeggETRWHKTGKTRPVFV-GGRVKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 92 
                459*****************744456555778************.9*************6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.9721111IPR003441NAC domain
SuperFamilySSF1019418.37E-259111IPR003441NAC domain
PfamPF023657.1E-81692IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MGVHAAGVRK DGLVRHFFHR PSKAYTTGTR KRRKVHTDEE GGETRWHKTG KTRPVFVGGR  60
VKGYKKILVL YTNYGKQRKP EKTNWVMHQY HLGNNEEEKE GELVVSKVFY QTQPRQCGSV  120
IKDLLNPPKN NNNLRQNDES FVEYSCNIPN SFISFDHAAQ NGGTTPEISV THFGAGSFLN  180
S
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881279.12e-84NAC domain-containing protein 73-like
RefseqXP_015881280.12e-84NAC domain-containing protein 73-like
SwissprotO494594e-69NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A2P5FJ857e-94A0A2P5FJ85_TREOI; NAC domain containing protein
STRINGPOPTR_0017s04800.12e-83(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1987955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.19e-59NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]