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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
PK28167.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 229aa MW: 26594.4 Da PI: 9.9182 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PK28167.1 | genome | CCBR | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 85.4 | 3.3e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ien + rqvtfskRr g++KKA ELS+LCdae+a+i+fs+tgkly y++
PK28167.1 9 KKIENITARQVTFSKRRRGLFKKALELSTLCDAEIALIVFSTTGKLYHYAT 59
68***********************************************86 PP
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| 2 | K-box | 39.5 | 2.4e-14 | 85 | 171 | 10 | 97 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97
+ e+ ++ +a Lkke+e+ e+Rh++Ge+L++Lsl+eL++Le+ ++ sl+++ + K++ l++i lqk el e+n++ ++k
PK28167.1 85 PSDMLENERKRYALLKKELEKKTMELRHIMGENLQELSLEELKKLEKSVHISLSRVNEIKDQSNLKEITFLQKG-IELLEDNQRVQQK 171
45567889999************************************************************975.5555666666665 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 29.955 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 9.8E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 5.1E-32 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.5E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.01E-38 | 3 | 74 | No hit | No description |
| Pfam | PF00319 | 3.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.5E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.5E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 2.7E-10 | 87 | 171 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 10.899 | 89 | 180 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 229 aa
Download sequence Send
to blast |
MTRQKIEIKK IENITARQVT FSKRRRGLFK KALELSTLCD AEIALIVFST TGKLYHYATS 60
SMPQVIERHK SHSDQNRLHN KLSQPSDMLE NERKRYALLK KELEKKTMEL RHIMGENLQE 120
LSLEELKKLE KSVHISLSRV NEIKDQSNLK EITFLQKGIE LLEDNQRVQQ KSNVVKVGDA 180
FEKCLIDSTS TKSHIFNQPQ PQDHQNQSQN QNHFDSSDTT LKLGLPFPN
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