PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK28082.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 284aa    MW: 30720.9 Da    PI: 5.146
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK28082.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-1863113155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  PK28082.1  63 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 113
                68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.8E-1363113IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2164122IPR016177DNA-binding domain
PROSITE profilePS5103223.4264121IPR001471AP2/ERF domain
SMARTSM003802.8E-3664127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-3264122IPR001471AP2/ERF domain
PRINTSPR003673.2E-106576IPR001471AP2/ERF domain
CDDcd000187.01E-3265123No hitNo description
PRINTSPR003673.2E-1087103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MSSNSTITTT EFQLSSETES SSNSFSSTSP PLSPSSPGST HPTQMGIDPK KSVKRVRDSS  60
KHPVYRGVRM RNWGKWVSEI REPRKKSRIW LGTFPTPEMA ARAHDVAALS IKGNSAILNF  120
PELAHSLPRP VSLSARDVQA AAAKAAQMHN FDHHAPPSST VAVTESSAAA LVSSSSTSSL  180
SSLVSGMEIS GTEYQSDELG EIVELPRLGT SYDSAELGNE FVFVDSEEGW VYPPPWLQNV  240
ENFGYFQRPE NDYFGGGYGG AAVPENSCMV STSSNGFEGL LWDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1859121972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024165955.13e-90dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD32e-74DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A2P5FA361e-103A0A2P5FA36_TREOI; AP2/ERF domain containing protein
STRINGXP_008378086.11e-88(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-64ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]