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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK27921.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | bHLH | ||||||||
Protein Properties | Length: 235aa MW: 26243.2 Da PI: 9.3368 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44 | 4.1e-14 | 90 | 141 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+++P++ + ++ + a+i+ A++++k+L+ PK27921.1 90 QRMTHIAVERNRRKQMNDYLAVLRSMMPSS---YVQRGDQASIVGGAINFVKELE 141 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.66E-17 | 88 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.14E-14 | 88 | 145 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.6E-13 | 88 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.059 | 89 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-11 | 90 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-9 | 95 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
XITSPSSMEL HNNNNNNNNH YSTNKFSSTD SAADYFTGNY TSSTTTLDGG RPPSSHVFSP 60 AAETTQATTT VRRKRRRIRS VKNKEEVENQ RMTHIAVERN RRKQMNDYLA VLRSMMPSSY 120 VQRGDQASIV GGAINFVKEL EQLLQFLEAQ KRSSTSSTTT TKKESSPSDS SDSDHSSNNN 180 SDLFSDFFIF PQYSTCSSSS NNNNNNNKVN INDHHQTKST AEKRSAVADV EVTMV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 72 | 76 | RKRRR |
2 | 73 | 77 | KRRRI |
3 | 90 | 101 | RMTHIAVERNRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010272971.1 | 1e-60 | PREDICTED: transcription factor bHLH96 | ||||
Swissprot | Q9C7T4 | 3e-40 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A1U8B9D6 | 3e-59 | A0A1U8B9D6_NELNU; transcription factor bHLH96 | ||||
STRING | XP_010272971.1 | 4e-60 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22490.1 | 4e-32 | bHLH family protein |
Publications ? help Back to Top | |||
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