PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK27085.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | NAC | ||||||||
Protein Properties | Length: 295aa MW: 32515.2 Da PI: 8.4136 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 116.7 | 2.4e-36 | 53 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..........tksgy 82 lp+G++F+Ptd+el+ e+L++kve+k+++ + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ + + PK27085.1 53 LPAGVKFDPTDQELI-EHLEAKVEDKDMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqtecdhlqqGGETR 150 799************.99*********5553344444434666646**********.555666799******************8576666664433778 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l PK27085.1 151 WHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 197 ************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.29E-39 | 49 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.524 | 53 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.1E-17 | 54 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
ILKAMNKSSN QLGSSITSSD LIDAKLEEHQ MCGSKHCPGC GHKLEGKPDW LGLPAGVKFD 60 PTDQELIEHL EAKVEDKDMK SHPLIDEFIP TIEGEDGICY THPEKLPGVT RDGLSRHFFH 120 RPSKAYTTGT RKRRKIQTEC DHLQQGGETR WHKTGKTRPV MVNGKQKGCK KILVLYTNFG 180 KNRKPEKTNW VMHQYHLGQH EEEKEGELVV SKIFYQTQPR QCNWSDRAAS AAASVVVAEG 240 ISSDGGGGIG GGGGGRRDST GSGSCSSKEI SSSGNIINNP QRDQHHHHNQ MVAAX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00460 | DAP | Transfer from AT4G29230 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010110863.1 | 1e-160 | NAC domain-containing protein 75 | ||||
Swissprot | Q9M0F8 | 1e-144 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A2P5FRY5 | 1e-176 | A0A2P5FRY5_TREOI; NAC domain containing protein | ||||
STRING | XP_010110863.1 | 1e-159 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4520 | 34 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-145 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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