PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK26618.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

NAC

Protein Properties

Length: 196aa MW: 22746.5 Da PI: 9.5352

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK26618.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	183.4	5.5e-57	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeelv +yL +k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyf+s+rd+ky++g+r+nrat++gyWkatgkd++v s +++ PK26618.1 6 LPPGFRFHPTDEELVAYYLDRKITGQTIEL-EIIPEVDLYKCEPWDLPeKsYLPSKDMEWYFYSPRDRKYPNGSRTNRATRAGYWKATGKDRAVQS-QRR 103 79**************************.99**********94345566888*********************************9.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLv+y+grap+g +t+Wvmheyrl PK26618.1 104 PVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133 **************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.19E-64	3	158	IPR003441	NAC domain
PROSITE profile	PS51005	60.845	6	158	IPR003441	NAC domain
Pfam	PF02365	1.3E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MAPMSLPPGF RFHPTDEELV AYYLDRKITG QTIELEIIPE VDLYKCEPWD LPEKSYLPSK 60 DMEWYFYSPR DRKYPNGSRT NRATRAGYWK ATGKDRAVQS QRRPVGMKKT LVYYRGRAPH 120 GIRTNWVMHE YRLLDDSLGG TVSSTLKDSY ALCRVFKKTI QIPKCNKNEE NPDNNNINGR 180 NNTEKDNQST ALGIIX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-59	1	158	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-59	1	158	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-59	1	158	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-59	1	158	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	3e-59	1	158	15	168	NAC domain-containing protein 19
3swm_B	3e-59	1	158	15	168	NAC domain-containing protein 19
3swm_C	3e-59	1	158	15	168	NAC domain-containing protein 19
3swm_D	3e-59	1	158	15	168	NAC domain-containing protein 19
3swp_A	3e-59	1	158	15	168	NAC domain-containing protein 19
3swp_B	3e-59	1	158	15	168	NAC domain-containing protein 19
3swp_C	3e-59	1	158	15	168	NAC domain-containing protein 19
3swp_D	3e-59	1	158	15	168	NAC domain-containing protein 19
4dul_A	3e-59	1	158	12	165	NAC domain-containing protein 19
4dul_B	3e-59	1	158	12	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00205	DAP	Transfer from AT1G54330	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010092473.1	1e-119	NAC domain-containing protein 86
Swissprot	Q9FFI5	8e-87	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A2P5CMM2	1e-122	A0A2P5CMM2_TREOI; NAC domain containing protein
STRING	XP_010092473.1	1e-119	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10508	33	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54330.1	4e-97	NAC domain containing protein 20

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]