PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK26613.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | Trihelix | ||||||||
Protein Properties | Length: 511aa MW: 58626.1 Da PI: 6.0831 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 99.1 | 3.8e-31 | 51 | 135 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r+++ k+plWeevs+km+e+gf+rs+k+Ckek+en+ k++k++++g++++++++ +++f+qlea PK26613.1 51 RWPRQETLALLDIRSDMDAKFRDSSIKAPLWEEVSRKMSEHGFNRSAKKCKEKFENIYKYHKRTRDGRSGKSNGKA--YRFFEQLEA 135 8********************************************************************9866665..*******85 PP | |||||||
2 | trihelix | 105.8 | 3e-33 | 346 | 431 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+ev aLi++r++++++++++ k+plWe++s++mr+ g++rs+k+Ckekwen+nk++k++k+++k+r e+s+tcpyf+ql+a PK26613.1 346 RWPKDEVDALIRLRTNLDTQYQDNGPKGPLWEDISAAMRKLGYNRSSKRCKEKWENINKYFKRVKDSNKRR-VEDSKTCPYFHQLDA 431 8********************************************************************98.78889********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.013 | 48 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.6E-20 | 50 | 136 | No hit | No description |
PROSITE profile | PS50090 | 6.969 | 50 | 108 | IPR017877 | Myb-like domain |
CDD | cd12203 | 1.82E-24 | 50 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.9E-5 | 342 | 402 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-4 | 343 | 405 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.7E-22 | 345 | 432 | No hit | No description |
PROSITE profile | PS50090 | 7.642 | 345 | 403 | IPR017877 | Myb-like domain |
CDD | cd12203 | 2.99E-24 | 345 | 410 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MLENSTLPEN LTATNPENGE VGGSSELAPV GLGEEERVGA EDGDRNWLGN RWPRQETLAL 60 LDIRSDMDAK FRDSSIKAPL WEEVSRKMSE HGFNRSAKKC KEKFENIYKY HKRTRDGRSG 120 KSNGKAYRFF EQLEALDHHS FDHPFPPSGD QVNTSLGESK TTAGTTRTSP SNVVINAIPC 180 SVHKPASNLG DSSPSNISSS SEESKGMRKE KKRLTQFFER LMKEVTDSQE KLQRKFIETL 240 EKCEQDRLAR EEVWKKQELE RIKRESDLLV QERSIAAAKD AAVLAFLKKF SEQTEPFQFP 300 EYPIVSVEKD VDKQEKNHSG NDEQTCLDNQ EKFNNNKKFV QVSSSRWPKD EVDALIRLRT 360 NLDTQYQDNG PKGPLWEDIS AAMRKLGYNR SSKRCKEKWE NINKYFKRVK DSNKRRVEDS 420 KTCPYFHQLD ALYNKKTKKV DDPENTGYDM RPEELLMHMM GGQEQQQQPA EPATENCESE 480 NLSQNHEGDN EIVDKDGYKD TANPSSMEIM G |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00243 | DAP | Transfer from AT1G76880 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010098893.1 | 0.0 | trihelix transcription factor GT-2 | ||||
Swissprot | Q39117 | 5e-99 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A2P5ED76 | 0.0 | A0A2P5ED76_TREOI; TFIIB transcription factor | ||||
STRING | XP_010098893.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 1e-122 | Trihelix family protein |