PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Function |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PK26573.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

GRAS

Protein Properties

Length: 70aa MW: 8444.64 Da PI: 9.6836

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK26573.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	53.9	3.4e-17	3	70	296	362
GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgW 362 nv+aceg++r+er et+++W++r +aG+k++pls++++k++k +++++ ++++ v+e+++++++gW PK26573.1 3 NVIACEGSKRIERPETYKQWHARNLRAGLKQLPLSQEIMKKVKKMMKETCyQKEFLVDEDNQWMLQGW 70 9***************************************998877655999************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	12.705	1	61	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-14	3	70	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 70 aa Download sequence Send to blast
XLNVIACEGS KRIERPETYK QWHARNLRAG LKQLPLSQEI MKKVKKMMKE TCYQKEFLVD 60 EDNQWMLQGW

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018850477.1	9e-30	PREDICTED: scarecrow-like protein 14
Swissprot	P0C883	5e-24	SCL33_ARATH; Scarecrow-like protein 33
TrEMBL	A0A2P5DQI7	1e-33	A0A2P5DQI7_PARAD; GRAS transcription factor
STRING	XP_010256894.1	6e-28	(Nelumbo nucifera)
STRING	GSMUA_Achr6P34090_001	7e-28	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14801	8	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	3e-24	GRAS family protein