PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK26499.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WRKY
Protein Properties Length: 501aa    MW: 55005 Da    PI: 7.0032
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK26499.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.28.3e-24191247259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                +DgynWrKYGqK+vk+ + +rsYY+Ct+ +C++kk +e++++ ++v+e++Y+++H+h+
  PK26499.1 191 SDGYNWRKYGQKQVKSPQGSRSYYKCTFFECCAKK-IECCDHFGHVTEVVYKSQHTHD 247
                7********************************98.*********************7 PP
2WRKY96.61.7e-30363420259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 Dg++WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e++ +++++v+itY+g H+h+
  PK26499.1 363 ADGHRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETALDNTNAVIITYKGVHDHD 420
                6********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-20187249IPR003657WRKY domain
SuperFamilySSF1182904.97E-19189249IPR003657WRKY domain
SMARTSM007748.7E-23190248IPR003657WRKY domain
PROSITE profilePS5081116.467191249IPR003657WRKY domain
PfamPF031061.9E-16192247IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-31347422IPR003657WRKY domain
PROSITE profilePS5081131.031357422IPR003657WRKY domain
SuperFamilySSF1182901.01E-26358422IPR003657WRKY domain
SMARTSM007742.3E-35362421IPR003657WRKY domain
PfamPF031062.5E-23364419IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MAAERQSSEA ENLKTNEEQG EEEGEEEESE ESDGGGEEEE GERRLGEVQS SELRSGAELK  60
ETQLETLAAS SSLEVPKKDV LQVNSTSKSK DGAHLEGQIH NTHNEVATGA TAQYINAPKE  120
KQHQSNACRT LSELSPTSVT QSISSAPSPI LLEQRFSPPK ENDLCASMPK KQNSSDVKIV  180
STVPAVKIPA SDGYNWRKYG QKQVKSPQGS RSYYKCTFFE CCAKKIECCD HFGHVTEVVY  240
KSQHTHDPPK KSNNTREHKL SSAERFSGYN VTKQPCKVPK DSDPSTSAKE STHETLPSSE  300
RKRQHSVNSD ENGDLKVKEE LDNEPEQKKR LKKSNVEYAG SVLKPSKKPK FVVHAAGDVG  360
ISADGHRWRK YGQKMVKGNP HPRNYYRCTS AGCPVRKHIE TALDNTNAVI ITYKGVHDHD  420
MPVPKKRHGP PSAPLVAAAA PASMSNLQSK KLDATPNQAS STQWSVDNEG ELTGEALDLG  480
GEKAMESART LLSIGFEIKP C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-25350422274WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015892651.10.0probable WRKY transcription factor 32
SwissprotP595831e-131WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A2P5FNQ30.0A0A2P5FNQ3_TREOI; WRKY domain containing protein
STRINGXP_010086863.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51983456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-124WRKY DNA-binding protein 32