PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK26398.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 178aa    MW: 19956.5 Da    PI: 8.9591
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK26398.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.7e-1878128255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+++AeIrdp+      r++lg+f+t  +Aaka++ a+ kl+g
  PK26398.1  78 HYRGVRRRP-WGKFAAEIRDPTRK--GSRVWLGTFDTDMDAAKAYDCAAFKLRG 128
                7********.**********8542..4**********88*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-3177137IPR001471AP2/ERF domain
SMARTSM003804.5E-3678142IPR001471AP2/ERF domain
PROSITE profilePS5103224.63278136IPR001471AP2/ERF domain
PfamPF008479.0E-1378128IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2278138IPR016177DNA-binding domain
PRINTSPR003672.8E-137990IPR001471AP2/ERF domain
CDDcd000181.24E-2186136No hitNo description
PRINTSPR003672.8E-13118138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
XSSSPSSSSY QFQSVKQEYS QSESESYSAV SDDNPDQFLD LIMEPKSETD PLLASSPESS  60
NSSPQKTTTT EYSGERRHYR GVRRRPWGKF AAEIRDPTRK GSRVWLGTFD TDMDAAKAYD  120
CAAFKLRGRK AILNFPLEAG RSDPPQNTGR GRNKRKSGQD QEAPEPETES TTKRQART
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-2977137464ATERF1
3gcc_A9e-2977137464ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008234444.12e-50PREDICTED: ethylene-responsive transcription factor ERF106
SwissprotQ9LY056e-43EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLA0A2P5F3P49e-75A0A2P5F3P4_TREOI; AP2/ERF transcription factor
STRINGXP_008234444.16e-50(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.12e-35ERF family protein
Publications ? help Back to Top
  1. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]