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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK25743.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | ERF | ||||||||
Protein Properties | Length: 63aa MW: 7120.75 Da PI: 10.6024 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.6 | 2.7e-17 | 2 | 46 | 9 | 56 |
AP2 9 dkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ +g+++AeIrd + ng +r++lg+f taeeAa+a+++a+ +++g+ PK25743.1 2 RP-WGKFAAEIRDS-NrNG--ARIWLGTFATAEEAARAYDRAAFSMRGP 46 56.**********4.4254..*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.4E-12 | 1 | 45 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.192 | 1 | 53 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.84E-21 | 1 | 54 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-27 | 1 | 59 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.06E-22 | 1 | 55 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.4E-27 | 1 | 54 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 63 aa Download sequence Send to blast |
RRPWGKFAAE IRDSNRNGAR IWLGTFATAE EAARAYDRAA FSMRGPFAIL NFPNDYPNLS 60 VPX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-27 | 1 | 56 | 20 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010111910.1 | 5e-32 | ethylene-responsive transcription factor ERF096 | ||||
Swissprot | Q9LTC5 | 4e-28 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A2P5CNI8 | 1e-30 | A0A2P5CNI8_PARAD; AP2/ERF transcription factor | ||||
TrEMBL | A0A2P5E849 | 1e-30 | A0A2P5E849_TREOI; AP2/ERF transcription factor | ||||
TrEMBL | W9SJP6 | 1e-30 | W9SJP6_9ROSA; Ethylene-responsive transcription factor | ||||
STRING | XP_010111910.1 | 2e-31 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF270 | 33 | 215 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 8e-17 | ERF family protein |
Publications ? help Back to Top | |||
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