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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK25206.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | NAC | ||||||||
Protein Properties | Length: 287aa MW: 32827.1 Da PI: 6.784 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.5 | 5.1e-53 | 7 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtdeelv++yL++k++++++++ +i+e+d+yk++PwdLp ++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ + + v PK25206.1 7 LPPGFRFHPTDEELVMHYLCRKCASQPISV-PIIAEIDLYKYDPWDLPGLATYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGN--PKPV 103 79****************************.88***************7667789*************************************98..789* PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kk Lvfy g+apkgekt+W+mheyrl PK25206.1 104 GIKKALVFYAGKAPKGEKTNWIMHEYRL 131 **************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-63 | 3 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.151 | 7 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-27 | 8 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MTGELELPPG FRFHPTDEEL VMHYLCRKCA SQPISVPIIA EIDLYKYDPW DLPGLATYGE 60 KEWYFFSPRD RKYPNGSRPN RAAGTGYWKA TGADKPIGNP KPVGIKKALV FYAGKAPKGE 120 KTNWIMHEYR LADVDRSARK KNSLRLDDWV LCRIYNKKGS IEKKHQFNSN RNLSFPEIEE 180 KKPEILNTLP PPPQPAATTT TGGNDFVYFD TSESVPRLHT DSSCSEHVVS PEFTCEVQSE 240 PKWKDDWDKA LDFPYNYMDA TVDNSFGPAG NQMSPLQDIF MYLQKPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-80 | 3 | 163 | 11 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010095416.1 | 1e-178 | NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 1e-153 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | W9R9L0 | 1e-177 | W9R9L0_9ROSA; NAC domain-containing protein 2 | ||||
STRING | XP_010095416.1 | 1e-178 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-150 | NAC family protein |