PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK25112.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HSF
Protein Properties Length: 492aa    MW: 55096.2 Da    PI: 4.9686
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK25112.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.51.6e-36181102103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sws+++nsfvv++e +fa+++LpkyFkh+nf+SFvRQLn+YgFkkv+ ++         weF+++ F +g+k+ll++i 
     PK25112.1  18 FLSKTYDMVDDSSTNSIVSWSSQNNSFVVWNEPQFARDLLPKYFKHNNFSSFVRQLNTYGFKKVDPDR---------WEFANEGFLRGQKHLLKSIT 105
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
     PK25112.1 106 RRKTT 110
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.2E-3911102IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.3E-6114107IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.22E-3514107IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-3118107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-191841IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-195668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-196981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MAGSRDTSSI NNSPPPPFLS KTYDMVDDSS TNSIVSWSSQ NNSFVVWNEP QFARDLLPKY  60
FKHNNFSSFV RQLNTYGFKK VDPDRWEFAN EGFLRGQKHL LKSITRRKTT HPHQQAQAPS  120
SQVGACVELG NFGLEEEVER LKRDKNVLMQ ELVRLRQQQQ TTDHQLQNVG QRVQVMEQRQ  180
QQMMSFLAKA MHRPGLLAQL VQQQNESNRH ITVGNKKRRL PRQEDENSAS EHLIYSPDGQ  240
IVKYQPSMNE AAKAMLRQIL KMNTSPRREP SMNNPDAFLI DNVPSSNALD SGSTDTYSRI  300
SEVTLSEVPQ TSAQSDPGFL VISSSKPPSE IITSPLVGSS SVKAAQLQEV NVQSCHKDET  360
LPDFIPMIET QLQSTEDLSD VNLVNSGTTN AEGGDMSVVL DGPTHVESDD FSPNSHDGVP  420
KLPGINDIFW EQFFTGSPLT GDVDEINASS VDCEMTQDED FLLGKENGWD HTQHMNNLTE  480
GMGLLASECR RN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-251610927131Heat shock factor protein 1
5d5v_B1e-251610927131Heat shock factor protein 1
5d5v_D1e-251610927131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888349.10.0heat stress transcription factor A-1e-like isoform X1
SwissprotQ84T611e-158HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A2P5FZJ90.0A0A2P5FZJ9_TREOI; Heat shock transcription factor
STRINGEMJ130330.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-132heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]