PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK23964.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bZIP
Protein Properties Length: 414aa    MW: 43895.2 Da    PI: 6.926
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK23964.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_170.13.3e-22311373163
                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                e+elkr++rkq+NRe+ArrsR+RK+ae++eL++++++L++eN  L++e+++++ e+++l se+
  PK23964.1 311 ERELKRQKRKQSNRESARRSRLRKQAECDELAQRADALKEENANLRSEVNRIRSEYDQLLSEN 373
                89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.1E-29199IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165964.8E-55139278No hitNo description
Gene3DG3DSA:1.20.5.1701.0E-17304369No hitNo description
SMARTSM003385.4E-22311375IPR004827Basic-leucine zipper domain
PfamPF001701.2E-20311373IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.15313376IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.38E-11314370No hitNo description
CDDcd147029.92E-24316367No hitNo description
PROSITE patternPS000360318333IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MGSSEMDKPA KDREKDSKTP PPPSTQEQSS TTSTGAVNPD WSGFQAYSPM PPHGFLASSP  60
QPHPYMWGVQ HIMPPYGTSP HPYVAMYPHG GLYAHPSMPP GSYPFSPFAI PPPNGIAAEA  120
SGNTPGSIEA DGRPSEVKEK LPIKRSKGSL GSLNMITGKN SELGKTSGGS ANGGYSKSAE  180
SASEGSSEGS DVNSQDDSQL KSGGRQDSLE GDASQNGNSM HGPQNGGPNT PHSMVNQTMN  240
IMPITAAGGG APGAVPGPAT NLNIGMDYWG APAASAIPAL RGKVPSTPVA GGIVTAGSRD  300
SVQSQLWLQD ERELKRQKRK QSNRESARRS RLRKQAECDE LAQRADALKE ENANLRSEVN  360
RIRSEYDQLL SENTSLKEKL GEVPGQDDLR SGRSEQHLNN DTRQTGQIEK HGGH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1327333RRSRLRK
2327334RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010088657.10.0bZIP transcription factor 16
SwissprotQ501B21e-171BZP16_ARATH; bZIP transcription factor 16
TrEMBLW9R1Z80.0W9R1Z8_9ROSA; Transcription factor HBP-1a
STRINGXP_010088657.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40173256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-151basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]