PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK23881.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 443aa    MW: 48595.8 Da    PI: 8.0076
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK23881.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.95.5e-115378227
               -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
               ++  C+++ rtG C++G++C+F+H+p
  PK23881.1 53 GEQDCSYYIRTGLCRFGATCRFNHPP 78
               6789********************97 PP
2zf-CCCH38.42.1e-1299123327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C++f++tGtCk+G++CkF+H++
  PK23881.1  99 QAECQYFLKTGTCKFGATCKFHHPR 123
                689********************96 PP
3zf-CCCH35.51.6e-11145168326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                + +C +++rtG+Ck+G++CkF+H+
  PK23881.1 145 ETECAYYLRTGQCKFGSTCKFHHP 168
                578********************8 PP
4zf-CCCH38.61.8e-12303329127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C+f+++tG Ck+G+ CkF+H++
  PK23881.1 303 PGQPECQFYMKTGDCKFGAVCKFHHPR 329
                5789*********************96 PP
5zf-CCCH40.15.9e-13349375127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ++++lC f++r+G+Ck+G++CkF H++
  PK23881.1 349 PGEPLCIFYSRYGICKFGPSCKFDHPM 375
                589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.3335179IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-55178IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-75378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-55479IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-45777IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.79396124IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-696123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-699125IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-1099123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-5102123IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-5142169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.169142170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6143170IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9145168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4148167IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-6302329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502302330IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-9304329IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-6306332IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-5308330IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7348375IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709348376IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-10350375IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5351375IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-4353373IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MEFDGEIIPM SHLASVTEAA PSLSPSFSED AMWQMNLRSS ETMEPGTYPE RPGEQDCSYY  60
IRTGLCRFGA TCRFNHPPNR KLAIATARMK GEFPERIGQA ECQYFLKTGT CKFGATCKFH  120
HPRDKAGIAG RVSLNMLGYP LRPNETECAY YLRTGQCKFG STCKFHHPSP TNMMVSMRGS  180
PVYPTVQSPT TPGQQSYMGG MTNWSRASFI PSPRWQGSSS YAPLIVPQGM VSVPGWNAYS  240
GQLGSVSSPD NQPAAGNSQM YGTSRQTDQA NTGSQGTYSP YRSSSVPVGF YALPRENVFP  300
ERPGQPECQF YMKTGDCKFG AVCKFHHPRE RLIPTPDCVL SPMGLPLRPG EPLCIFYSRY  360
GICKFGPSCK FDHPMGIFTY NLSASSSPDA PVLRLLGSSS GTAQLNFSSE GLVEAGSTKA  420
RRLSLAETRQ MPPGEDNDTD TED
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024030975.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X2
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A2P5B9Q70.0A0A2P5B9Q7_PARAD; Zinc finger, CCCH-type
STRINGXP_008218439.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1