PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK23854.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family G2-like
Protein Properties Length: 380aa    MW: 43722.3 Da    PI: 7.5866
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK23854.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.18.1e-331972255
    G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
               prlrWtpeLH++Fv+a+e+LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+
  PK23854.1 19 PRLRWTPELHHCFVHAIERLGGHKKATPKLVLQLMDVKGLTISHVKSHLQMYRS 72
               8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-311573IPR009057Homeodomain-like
PROSITE profilePS5129410.7311575IPR017930Myb domain
SuperFamilySSF466891.79E-151773IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-231972IPR006447Myb domain, plants
PfamPF002498.0E-92071IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MSSCGRSGAV RQYIRSKVPR LRWTPELHHC FVHAIERLGG HKKATPKLVL QLMDVKGLTI  60
SHVKSHLQMY RSMRGDLVKQ DRTSSNHFQR SRQNFNEEYE HNRRIIIDHH DENDVVDDDD  120
EDEDNQYEFE YDDDEDDQLI NNNVGFLNSS SKRIRESDSN HSIYTSLPSK RARSSSRVQC  180
NRERIISSTS NERVRNPYYF DDYNSKLLGL GLGCHDHHHQ PQPHQPQQQL FKGIIKETHS  240
SPPFSLPHSL YNLNPFKYAV QESDFFKANK LVDRSYEPKR PCKEEKTTMT TALQVDRDPE  300
ARGFGLSLSL PLHHHHHHLS SNKSNASSMS EISEAITSSY NTTTTTNNNN TMSAYKDCSS  360
SSSAKHNRLN LDLSIALCGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093351.11e-102uncharacterized protein LOC21405703
RefseqXP_024019425.11e-102uncharacterized protein LOC21405703
TrEMBLW9R1B91e-101W9R1B9_9ROSA; Putative Myb family transcription factor
STRINGXP_010093351.11e-102(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55393353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.13e-33G2-like family protein