PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK23618.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 488aa    MW: 54418.8 Da    PI: 5.6089
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK23618.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.6e-12294339454
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  PK23618.1 294 NHVEAERQRREKLNNRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 339
                799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-4827201IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.028290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-17291357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.96E-14293344No hitNo description
Gene3DG3DSA:4.10.280.102.6E-16294350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-10294339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-15296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MEDLMISPSS SSSLVSLSQE QPTVVVLQQR LQLLLQTQPD CWNYAIFWQT SNDDAGRIFL  60
TWGDGHFQAS KHYSTTRTTH HPQTLHLDRK IIDDDDDDDV INTNGATDAN ADAEWFYVMS  120
LSRSFFAGEG VPGKALSSGS LVWLTGGHEL RYYNCDRANE AQLHGIETLV CIPTSCGVLE  180
LGSSKIIMEN WGLVQKAKSL FGSTDPNPIQ FLHRQNISFA DIGITAGARK ETDINTNETK  240
TLLPLIKTNI NSIYSESDNS GSISDYPVPV DNVSKRVPKK RGRKPGLGRD TPLNHVEAER  300
QRREKLNNRF YALRAVVPNV SRMDKASLLS DAVSYINELK TKIEELESQL VISQRDYHNN  360
KRVKVEMGCD NSSLDNQSTC TTSVNNSNNS SSDHYQSPSA AVGEVDRDGI ELDVKIVGTD  420
AMIRVQSENE NYPSARLMDA LRELQFQVNH ASVSTINDLM LQDVVVKVPD QRMRSDHQAL  480
KAAILARF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-31272019192Transcription factor MYC3
4rqw_B4e-31272019192Transcription factor MYC3
4rs9_A4e-31272019192Transcription factor MYC3
4yz6_A4e-31272019192Transcription factor MYC3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010100678.10.0transcription factor MYC2
TrEMBLA0A2P5DQE10.0A0A2P5DQE1_PARAD; Basic helix-loop-helix transcription factor
STRINGXP_010100678.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.17e-63bHLH family protein