PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK23355.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 554aa    MW: 60696.4 Da    PI: 6.8527
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK23355.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.7e-09365412455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  PK23355.1 365 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 412
                8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.29E-17359429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.29E-10359416No hitNo description
PROSITE profilePS5088815.663361411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-17361430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-6365412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10367417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MENDFFLNAG LTIPNNWQST TTVSVSGPLE IQPMELNCSS EQSPEYGFYN NNNNPTWEKS  60
TVEQGMQFDS ALSSMVSSPV ASNSNISNDS FVIRELIGKL GNIGNSGEIS PHSQNFMTAT  120
PAPANPYIAG NRSTNTSCYS TPMNSPQKLK LEKLPSMGKS MAVNSTVAEL SADPGFAERA  180
ARFSCFGSRS FNGRTTQLGL NNNSEFRSNN NNNNNNPLIG HGKLSRVSSS PSLKALEKQN  240
SPLLLQERTT ANSQDESTVS EQNPNGEMGC LRPPPSNELN SRKRKANPKG GKSKDPSTKG  300
VEINDNLNSK RNKQTEVSNG NDKSSPKPEE ETNNDKQAKN NSPKPPEPPK DYIHVRARRG  360
QATDSHSLAE RVRREKISER MKLLQDLVPG CNKVTGKALM LDEIINYVQS LQRQVEFLSM  420
KLSSVNTRLD TNMETLMSKD IFQPNSSIFP LDSSAQSIYG HQQNSVLHGG ISSGPMAHNL  480
MDPLDHTALC QSLGMQLPQL NGFSELISQY PQFGEDDLHT IVQMGFGQNQ TTDGSLQPQS  540
LNGPNQVSHM KVEL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015892293.10.0transcription factor bHLH62
TrEMBLA0A2P5B2Q90.0A0A2P5B2Q9_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_008244684.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-108bHLH family protein