PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

FAR1

Protein Properties

Length: 789aa MW: 91023 Da PI: 8.12

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK22885.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.4	7.5e-21	70	144	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn YA++vGF++r+ + ++s++ng++ +r+fvCskeg++ + +rtgC a +kv+++++gkw+v+ + ++HnHel PK22885.1 70 EFYNLYARRVGFKIRTGQLYRSRTNGTVSSRRFVCSKEGFQLN--------------SRTGCPALIKVQRRDSGKWVVDLFLKDHNHEL 144 6*************************************876..............589*************************98 PP
2	FAR1	66	1e-20	226	300	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY++YA + GFs+r+ + +sk +g+it+r+fvCskeg+++++ r gC a +++k++++g+w+v++l++ HnHel PK22885.1 226 QFYQAYAASKGFSIRIGQLFRSKLDGSITSRRFVCSKEGFQHPS--------------RLGCGAFMRIKRQESGRWVVDRLQKGHNHEL 300 6*************************************9994..............789*************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-16	70	144	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.4E-16	226	300	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.3E-26	401	493	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.472	663	711	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.8E-6	686	713	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	4.2E-7	687	708	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 789 aa Download sequence Send to blast
MGVEPSSSHF TDFRSSGXDP NGIGFGHTVV LKAYPVGMVP AMNDVIEDEG ESRLEPYVGL 60 EFDSADEARE FYNLYARRVG FKIRTGQLYR SRTNGTVSSR RFVCSKEGFQ LNSRTGCPAL 120 IKVQRRDSGK WVVDLFLKDH NHELGLAAGE SPPPPPLLQK TSLTAKSVVT MPHRPRTKLI 180 EEAEDGRPSP SGIINIKRLK RDGEELQPKV EPFSGLEFNS ANEAYQFYQA YAASKGFSIR 240 IGQLFRSKLD GSITSRRFVC SKEGFQHPSR LGCGAFMRIK RQESGRWVVD RLQKGHNHEL 300 ELQLELHKKS VIASKRLLEE ESGGLENEDI FNISNANIVK RSRENHIGSD WYRVLLEYFQ 360 TRQAEDTSFF YAVEVDNGSC MSIFWADGRS RFSASQFGDA IILDTSYRKS IYLVPFATFI 420 GINHHKQPVL LACALIADES EEAFTWLFQT WLRAVSGLHP LSIIADQDKA IQHSIKKVFP 480 RTHHRFSLWQ LKAKEREYLN LMEGSLRYEY EKCIYQSETV DEFEASWTML LSRFGLIENA 540 WLKEMYEKRQ SWVPAYLRST FFAGITLNDN VESFFGAFLN AQTQLVEFVS RYERGVERRR 600 EEERKEDFNS YNLQVLLQTK EPVEEQCRRL YTLSVFKIFQ KELLQSYGYL GFKIYEEGAI 660 SRYLVRKGGN DNEKCVVTFS ATNLNVSCSC EMFEFEGVLC RHILRVFQIL DIREIPSRYV 720 LHRWTRNAEY GTLHDFESAR SSQELKALMV WSLRETASKY IEAGAASFEK HKLAYEIMRE 780 GGRKLCWQR

Sequence ? help Back to Top

Protein Sequence Length: 789 aa Download sequence Send to blast

MGVEPSSSHF TDFRSSGXDP NGIGFGHTVV LKAYPVGMVP AMNDVIEDEG ESRLEPYVGL  60
EFDSADEARE FYNLYARRVG FKIRTGQLYR SRTNGTVSSR RFVCSKEGFQ LNSRTGCPAL  120
IKVQRRDSGK WVVDLFLKDH NHELGLAAGE SPPPPPLLQK TSLTAKSVVT MPHRPRTKLI  180
EEAEDGRPSP SGIINIKRLK RDGEELQPKV EPFSGLEFNS ANEAYQFYQA YAASKGFSIR  240
IGQLFRSKLD GSITSRRFVC SKEGFQHPSR LGCGAFMRIK RQESGRWVVD RLQKGHNHEL  300
ELQLELHKKS VIASKRLLEE ESGGLENEDI FNISNANIVK RSRENHIGSD WYRVLLEYFQ  360
TRQAEDTSFF YAVEVDNGSC MSIFWADGRS RFSASQFGDA IILDTSYRKS IYLVPFATFI  420
GINHHKQPVL LACALIADES EEAFTWLFQT WLRAVSGLHP LSIIADQDKA IQHSIKKVFP  480
RTHHRFSLWQ LKAKEREYLN LMEGSLRYEY EKCIYQSETV DEFEASWTML LSRFGLIENA  540
WLKEMYEKRQ SWVPAYLRST FFAGITLNDN VESFFGAFLN AQTQLVEFVS RYERGVERRR  600
EEERKEDFNS YNLQVLLQTK EPVEEQCRRL YTLSVFKIFQ KELLQSYGYL GFKIYEEGAI  660
SRYLVRKGGN DNEKCVVTFS ATNLNVSCSC EMFEFEGVLC RHILRVFQIL DIREIPSRYV  720
LHRWTRNAEY GTLHDFESAR SSQELKALMV WSLRETASKY IEAGAASFEK HKLAYEIMRE  780
GGRKLCWQR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010105698.1	0.0	protein FAR1-RELATED SEQUENCE 7 isoform X1
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	W9RS14	0.0	W9RS14_9ROSA; Protein FAR1-RELATED SEQUENCE 7
STRING	XP_010105698.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]