PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK22837.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 278aa    MW: 30983.3 Da    PI: 7.7141
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK22837.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00044103125123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+C+ C++sF++   L  H  +H
  PK22837.1 103 YECKTCNRSFPSFQALGGHRASH 125
                99**********99999998887 PP
2zf-C2H213.80.00017184206123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++Cg  Fs+   L  H+r+H
  PK22837.1 184 HECSICGSEFSSGQALGGHMRRH 206
                78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.2E-9102125No hitNo description
PfamPF139121.9E-13102127IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.388103130IPR007087Zinc finger, C2H2
SMARTSM003550.06103125IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
SuperFamilySSF576673.2E-9179206No hitNo description
Gene3DG3DSA:3.30.160.602.1E-4179206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139128.6E-12183207IPR007087Zinc finger, C2H2
PROSITE profilePS501579.764184206IPR007087Zinc finger, C2H2
SMARTSM003550.02184206IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280186206IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MELDDQMNNN NILTMKGKRT KRHRQISGAA TASTSSSSSS TTISNNSSFS SDEEEQDMAN  60
CLILLAQGHH RRRRRRHNHK NSTITTASAT ANMKGSGGLL FVYECKTCNR SFPSFQALGG  120
HRASHKKPKL ISPEKIAAVA ADDDDRLYEL EDEEEEVMVE DDHLQEMLVF NTKTTSVNKG  180
NKVHECSICG SEFSSGQALG GHMRRHRPHP NTTTKTTINS SSFLHPNNNN NKAILLDLNL  240
PAPEEDSHNH RESNKFQFVS AQQPNIVFST PALVHCHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17075RRRRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010243202.11e-64PREDICTED: zinc finger protein ZAT5
TrEMBLA0A1U7Z6Q23e-63A0A1U7Z6Q2_NELNU; zinc finger protein ZAT5
STRINGXP_010243202.15e-64(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-44C2H2 family protein