PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK22481.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family FAR1
Protein Properties Length: 833aa    MW: 94358 Da    PI: 7.5661
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK22481.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.52.1e-1833122290
       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                fY  Y++ +GFsvrk+  ++ kr g+++ r++vCskeg+r++++ + +++++rtra tr+gC a ++v+ +k +g w  ++++ +H+H ++
  PK22481.1  33 FYYVYSNVLGFSVRKDDVRRDKR-GSVVLRRWVCSKEGQRRQKHIEqADRRQRTRAMTRIGCCAAFRVSYSKhKGIWIAKEFVPNHTHGVS 122
                9****************999955.5599999********999987746778889****************999***************875 PP
2FAR168.41.7e-21180268289
       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                fY  Y++ vGFsvr++ +k+  ++g+i+ r++vCskeg+r++++ +  ++++r+ra+tr+gC a+l v+ ++ +gkw+v +++++H+H+ 
  PK22481.1 180 FYYIYSNVVGFSVRRHDMKRD-KDGSIVFRKWVCSKEGQRRQKHLErIDRKKRSRAVTRVGCSASLSVRCNRkTGKWVVREFVSNHTHPW 268
                9**************999987.8889**************9998875789999****************9998***************85 PP
3FAR162.21.5e-19396485290
       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                fY  Y++ +GF+vrk+  k+  + g ++ r++vCskeg+r++++ +  +++r+++a tr+gC a ++v+ ++ +g w +++++  H+H+la
  PK22481.1 396 FYYMYSSVIGFNVRKDDVKRD-KRGLVYLRRWVCSKEGQRRQKHLErVDRKRKPKALTRVGCCAAFRVNYDRkKGSWIIKEFVPTHTHQLA 485
                9****************9998.5566**************9998875788999****************9999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-1633121IPR004330FAR1 DNA binding domain
PfamPF031011.6E-19180268IPR004330FAR1 DNA binding domain
PfamPF031012.9E-17396485IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 833 aa     Download sequence    Send to blast
XRFFLGVDKR MEELGTDDVV GVVFDSLEKA EAFYYVYSNV LGFSVRKDDV RRDKRGSVVL  60
RRWVCSKEGQ RRQKHIEQAD RRQRTRAMTR IGCCAAFRVS YSKHKGIWIA KEFVPNHTHG  120
VSRINGPWQD SRWPTQVGTY VFREWEQSSF HLGIDKRMNE LVKEDVVGAE FETLEKAEAF  180
YYIYSNVVGF SVRRHDMKRD KDGSIVFRKW VCSKEGQRRQ KHLERIDRKK RSRAVTRVGC  240
SASLSVRCNR KTGKWVVREF VSNHTHPWEP IDMLVTPPNQ NVESTDFVKE KDAAEGEGKG  300
NTGSNEQISS LREEVGSNRG CCLNNNCNEG SCGGRSNEFE LECGDTTGLS VQAQSCLERC  360
EQSHFFCLDI DKCFEELTTE TMVGLEFHTL EKAEAFYYMY SSVIGFNVRK DDVKRDKRGL  420
VYLRRWVCSK EGQRRQKHLE RVDRKRKPKA LTRVGCCAAF RVNYDRKKGS WIIKEFVPTH  480
THQLAAAKEL PSLKPNCNME DLVQTKTMGN VEDGREGSAS SVQPTCNVLF LQNNVVNERE  540
GCTSGVRPAC DISFLQDIGR EGSTSDVQPV CDMSFLHDNG REGSTGSDGQ PTCDVSFLQD  600
NIGDGREGSM SGVQQKSHVA SSLQENVVDR RDETTGGSVQ RRTSDVIHGI TLPPWTLTMP  660
KIDKGTQVIK IPCVNEVEGL PLPDDVKHVS AEIATMLLQM VGGLHEVVME TILEAKDKLK  720
EANEESQRKD LEIAELRNAL EAFKHAAEYQ GSKESNHDNP IEVRNFGGII NLNEANGEEI  780
VVDKGGEVGR QSVNGSDYGS KIYYEQNNLV RKHFILMDAD MTDRLPKKTK TNL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5BEF82e-78A0A2P5BEF8_TREOI; FHY3/FAR1 family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1594747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-17FAR1 family protein