PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK21971.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WRKY
Protein Properties Length: 274aa    MW: 30048.8 Da    PI: 7.3438
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK21971.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.43.4e-29127188159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                ldDg++WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+rs++dp+++eitY+ +H+++
  PK21971.1 127 LDDGFSWRKYGQKDILGAKYPRGYYRCTHRnvqGCLATKQVQRSDDDPTIFEITYRARHTCT 188
                59***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.825122185IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-28124189IPR003657WRKY domain
SuperFamilySSF1182901.19E-25126189IPR003657WRKY domain
SMARTSM007749.9E-41127189IPR003657WRKY domain
PfamPF031069.4E-27128187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
XLRGKEPAGQ LQLTIATSPP PSSSSSSSST SSSYESRQNL VQNILVSFEK ALSMLNWPGG  60
SSGTSNQSLL PAVPVMIGMS ESPPSLTGSP FSDDSDRDQD NKDYIGSRKR WTKQVRVSPG  120
MGLEGPLDDG FSWRKYGQKD ILGAKYPRGY YRCTHRNVQG CLATKQVQRS DDDPTIFEIT  180
YRARHTCTQA PGHVIGTTTT TTSTASTDQN QNNNNFPSLL EQMSHHQTHQ DDHHHNNILS  240
SLRSGLKVIT EGLENPHDGQ SPPLIISSNN FNFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-20127187868OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097859.11e-86probable WRKY transcription factor 53
SwissprotQ8H0Y82e-49WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBLA0A2P5BMT09e-93A0A2P5BMT0_PARAD; WRKY domain containing protein
STRINGXP_010097859.14e-86(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-50WRKY family protein
Publications ? help Back to Top
  1. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]