PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK21510.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

LBD

Protein Properties

Length: 199aa MW: 21560.1 Da PI: 6.988

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK21510.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.2	7e-44	12	110	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC ++C++apyfp e+p+k anvhk+FGasnv+kll++lp ++reda++sl+yeAear+rdPvyG+vg i+ lq+q+++l++el+++++ PK21510.1 12 PCAACKFLRRKCMPGCIFAPYFPPEEPQKSANVHKIFGASNVTKLLNDLPSHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKELDAANA 110 7*********************************************************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.229	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-42	12	109	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MASSSSSTYN SPCAACKFLR RKCMPGCIFA PYFPPEEPQK SANVHKIFGA SNVTKLLNDL 60 PSHQREDAVN SLAYEAEARV RDPVYGCVGA ISFLQRQVHR LQKELDAANA DLIRFACTEM 120 PPPPPLAPNV SDHHHLNNII HDHPMMSGPP RQGAGGGDSQ FYHHHPIGGG GGFSLPYNTT 180 SLPWSHDNIN EGGGGEGHL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-67	2	131	1	130	LOB family transfactor Ramosa2.1
5ly0_B	1e-67	2	131	1	130	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00581	DAP	Transfer from AT5G63090	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021634783.1	9e-81	LOB domain-containing protein 25
Refseq	XP_021634784.1	9e-81	LOB domain-containing protein 25
Swissprot	Q9FML4	2e-70	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A2C9UJA8	2e-79	A0A2C9UJA8_MANES; Uncharacterized protein
STRING	cassava4.1_029813m	4e-80	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1091	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	9e-72	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]