PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK21310.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family Trihelix
Protein Properties Length: 80aa    MW: 9331 Da    PI: 4.4622
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK21310.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix61.61.8e-19978270
   trihelix  2 WtkqevlaLiearremeerlrrgk.lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70
               W+++ev  Li++r++m++r+++g   ++ lWe++++k++  g+ers  +Ck+kwe++n + k  ++++++
  PK21310.1  9 WPESEVSRLIQFRTSMDSRFEQGGfPEEVLWEDIAAKLACLGYERSGLMCKDKWESINHYVKVSNNNNNN 78
               *********************97637899******************************99998888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.596166IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-4265IPR009057Homeodomain-like
PfamPF138372.7E-14778No hitNo description
CDDcd122031.29E-22770No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
XPNRDESTWP ESEVSRLIQF RTSMDSRFEQ GGFPEEVLWE DIAAKLACLG YERSGLMCKD  60
KWESINHYVK VSNNNNNNNE
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089408.11e-27trihelix transcription factor PTL
SwissprotQ9LZS07e-14PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A2P5AIL32e-33A0A2P5AIL3_PARAD; GAMYB transcription factor
STRINGXP_010089408.14e-27(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2186422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.14e-16Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]