PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK21140.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

bHLH

Protein Properties

Length: 415aa MW: 45956.4 Da PI: 7.2872

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK21140.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.4	5.3e-08	316	356	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L PK21140.1 316 ARQRRERISERIRVLQKLVPGG-----SKMDTASMLDEAANYLKFL 356 69****************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.307	307	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.84E-14	312	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.2E-13	313	362	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.3E-12	315	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-5	316	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.51E-4	329	361	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
PPPPPTTTTT GAWRGQTLTS RELCSSPYNI YNPRFISSTR TANTTDLGKV VQSSQVVSSN 60 NNIGKAPAAT TTTTTCSDLE SLDCLLSGTN SNTDTNSAEE DDDDGISMLF SDSRSLWNNN 120 IGAGSTSAAV SSGESENATN NNDNHNMSTC PLTNHHHEVD QSLHHDQSKL LSNNSTKRSR 180 DDHQNYDNNN NNNNMSFFNL LHQRDDRISP TTNKEGQAGF RLISESHHHD HLPKAKKPRT 240 EKRPPSSSNI NFQQPSNSSI SNSSVDQEPD PEAIAQMKEM IYRAAAFRPV NLGLELVEKP 300 KRKNVRISTD PQTVAARQRR ERISERIRVL QKLVPGGSKM DTASMLDEAA NYLKFLRSQV 360 KALENLGQKI DSMNCPPTNI AFSFNPSFPM QTHNVPSSLL QLQNPNHVHH GHYQC

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

PPPPPTTTTT GAWRGQTLTS RELCSSPYNI YNPRFISSTR TANTTDLGKV VQSSQVVSSN  60
NNIGKAPAAT TTTTTCSDLE SLDCLLSGTN SNTDTNSAEE DDDDGISMLF SDSRSLWNNN  120
IGAGSTSAAV SSGESENATN NNDNHNMSTC PLTNHHHEVD QSLHHDQSKL LSNNSTKRSR  180
DDHQNYDNNN NNNNMSFFNL LHQRDDRISP TTNKEGQAGF RLISESHHHD HLPKAKKPRT  240
EKRPPSSSNI NFQQPSNSSI SNSSVDQEPD PEAIAQMKEM IYRAAAFRPV NLGLELVEKP  300
KRKNVRISTD PQTVAARQRR ERISERIRVL QKLVPGGSKM DTASMLDEAA NYLKFLRSQV  360
KALENLGQKI DSMNCPPTNI AFSFNPSFPM QTHNVPSSLL QLQNPNHVHH GHYQC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	316	321	RQRRER

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010106120.1	1e-125	transcription factor bHLH87
TrEMBL	A0A2P5EFE8	1e-159	A0A2P5EFE8_TREOI; Basic helix-loop-helix transcription factor
STRING	XP_010106120.1	1e-124	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4530	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-65	bHLH family protein