PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK21140.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 415aa    MW: 45956.4 Da    PI: 7.2872
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK21140.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.3e-08316356954
                HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  PK21140.1 316 ARQRRERISERIRVLQKLVPGG-----SKMDTASMLDEAANYLKFL 356
                69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.307307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-14312371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-13313362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-12315365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-5316356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.51E-4329361No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
PPPPPTTTTT GAWRGQTLTS RELCSSPYNI YNPRFISSTR TANTTDLGKV VQSSQVVSSN  60
NNIGKAPAAT TTTTTCSDLE SLDCLLSGTN SNTDTNSAEE DDDDGISMLF SDSRSLWNNN  120
IGAGSTSAAV SSGESENATN NNDNHNMSTC PLTNHHHEVD QSLHHDQSKL LSNNSTKRSR  180
DDHQNYDNNN NNNNMSFFNL LHQRDDRISP TTNKEGQAGF RLISESHHHD HLPKAKKPRT  240
EKRPPSSSNI NFQQPSNSSI SNSSVDQEPD PEAIAQMKEM IYRAAAFRPV NLGLELVEKP  300
KRKNVRISTD PQTVAARQRR ERISERIRVL QKLVPGGSKM DTASMLDEAA NYLKFLRSQV  360
KALENLGQKI DSMNCPPTNI AFSFNPSFPM QTHNVPSSLL QLQNPNHVHH GHYQC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316321RQRRER
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010106120.11e-125transcription factor bHLH87
TrEMBLA0A2P5EFE81e-159A0A2P5EFE8_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010106120.11e-124(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-65bHLH family protein