PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK21041.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WRKY
Protein Properties Length: 517aa    MW: 56569.6 Da    PI: 8.1231
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK21041.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.31.8e-29113170260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                +DgynWrKYGqK vkg+e+ rsYYrCt+++C vkk++e+s+ ++k+v+i+Y g+H+h+k
  PK21041.1 113 EDGYNWRKYGQKLVKGNEYVRSYYRCTHPNCLVKKQLECSH-EGKIVNIVYFGQHDHPK 170
                7***************************************9.***************85 PP
2WRKY1017.2e-32291349159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ++Dg++WrKYGqK+vkg+ +prsYYrC+ +gCpvkk+ver++ d+k+v  tYeg+Hnh+
  PK21041.1 291 VNDGFRWRKYGQKMVKGNLNPRSYYRCSNSGCPVKKHVERASYDTKLVMATYEGQHNHD 349
                58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.8E-26105170IPR003657WRKY domain
PROSITE profilePS5081121.184107171IPR003657WRKY domain
SuperFamilySSF1182901.83E-23108170IPR003657WRKY domain
SMARTSM007748.1E-33112170IPR003657WRKY domain
PfamPF031063.5E-22113169IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.2E-34278351IPR003657WRKY domain
SuperFamilySSF1182904.58E-28283351IPR003657WRKY domain
PROSITE profilePS5081133.568286351IPR003657WRKY domain
SMARTSM007747.3E-37291350IPR003657WRKY domain
PfamPF031067.2E-25292349IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MVPLGEESVA AEVLDKQQQT ERNNTGNHVS QEICGTDVSI PESDKSGKLT CIKPGKTESV  60
RGSALDAFNL SQLGKSSPKI SMKASKVPET GVRTSQSGQE GSTPSIVREK VSEDGYNWRK  120
YGQKLVKGNE YVRSYYRCTH PNCLVKKQLE CSHEGKIVNI VYFGQHDHPK LQHNNPVAVG  180
FALSVVEEKQ NGAASLNPAK GTSVDEHRKP STQNEHVHTP LIPKIAALAS NDSSKSTLSQ  240
STKIKDDSDD DPDSKRQKKD RHCSKTTTED KPTSTSGPRV VVQTLSEVDI VNDGFRWRKY  300
GQKMVKGNLN PRSYYRCSNS GCPVKKHVER ASYDTKLVMA TYEGQHNHDM PPGRTVTHNV  360
SELSAPPTAD QVDNTAKSDG KTASLDMGVS TILEHESKPP KEQPNGELQT RSSPNTPDSN  420
TAIESCPTLD GKPDEQQNVK SGVKEERGPL QNVAVESGND NNSSSCTSWI KSQQNGESGI  480
VKSKPNQVVD NKLGLESHHN TSEPFKPDGR KHQQLSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-34111353276WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881045.11e-152WRKY transcription factor 1
SwissprotQ9SI373e-84WRKY1_ARATH; WRKY transcription factor 1
TrEMBLA0A2P5ESE20.0A0A2P5ESE2_TREOI; WRKY domain containing protein
STRINGXP_010112795.11e-127(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93583343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.23e-83zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]