PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK20993.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

C3H

Protein Properties

Length: 350aa MW: 38862.5 Da PI: 7.1241

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK20993.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.1	3e-08	129	149	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G C+ Gd+C FaHg PK20993.1 129 ACPEFRK-GNCRNGDSCEFAHG 149 5****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	3.4E-5	124	150	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.347	125	151	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-5	129	151	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.8E-6	129	149	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	33	159	182	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MGEPNPSNPT VRIPQWDPYE DPMAGGVSSP ISVNSNAGTG DFYHLLEKFS SLYRYLPSNE 60 FLHGESDSLG DELDVHADSF SCDHFRMFEF KVRRCGRARS HDWTECPFAH PGEKARRRDP 120 RKHHYSGIAC PEFRKGNCRN GDSCEFAHGV FECWLHPARY RTQPCKDGLS CGRRVCFFAH 180 TAEQLRVLPQ QSPRANGPCE SYDGSPIRHS FLSSPPVSPP SDSPPASPNS PNELLASMRN 240 LHLGKIKMSS SAPWGFQMGS GFISPRGGSM LRPGFCSAPS TPTPNPITLQ LGAMDLWDQT 300 FEEEPKMERV ESGKNIRAIM YAKLSRENSL GRDDSAAAAP DVGWISELVK

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MGEPNPSNPT VRIPQWDPYE DPMAGGVSSP ISVNSNAGTG DFYHLLEKFS SLYRYLPSNE  60
FLHGESDSLG DELDVHADSF SCDHFRMFEF KVRRCGRARS HDWTECPFAH PGEKARRRDP  120
RKHHYSGIAC PEFRKGNCRN GDSCEFAHGV FECWLHPARY RTQPCKDGLS CGRRVCFFAH  180
TAEQLRVLPQ QSPRANGPCE SYDGSPIRHS FLSSPPVSPP SDSPPASPNS PNELLASMRN  240
LHLGKIKMSS SAPWGFQMGS GFISPRGGSM LRPGFCSAPS TPTPNPITLQ LGAMDLWDQT  300
FEEEPKMERV ESGKNIRAIM YAKLSRENSL GRDDSAAAAP DVGWISELVK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015885103.1	1e-166	zinc finger CCCH domain-containing protein 23
Swissprot	O82199	1e-109	C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBL	A0A2P5EKZ2	0.0	A0A2P5EKZ2_TREOI; Zinc finger, CCCH-type
STRING	VIT_04s0008g00610.t01	1e-155	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2056	31	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	1e-110	C3H family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Swain S,Singh N,Nandi AK Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant. J. Biosci., 2015. 40(1): p. 137-46 [PMID:25740148] Singh N,Swain S,Singh A,Nandi AK AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling. Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333 [PMID:29327969]