PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK20762.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | HSF | ||||||||
Protein Properties | Length: 530aa MW: 59093.9 Da PI: 6.7146 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.6 | 1.1e-34 | 66 | 156 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y++++d++++e++sws+++nsfvv+++ ef++ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F k++k+ll++i+ PK20762.1 66 FLLKTYDMVDDSATDEIVSWSASKNSFVVWNPPEFSRLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEK---------WEFHNDDFVKDQKHLLKNIH 153 9********************999*****************************************999.........******************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k PK20762.1 154 RRK 156 *98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.3E-37 | 56 | 150 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 6.12E-35 | 61 | 155 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.3E-59 | 62 | 155 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-18 | 66 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.9E-30 | 66 | 155 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-18 | 104 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 105 | 129 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-18 | 117 | 129 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 530 aa Download sequence Send to blast |
QKKKKTKNPI LTPTPTPTPS PSPIPLIPSS NLIFKIQSQQ PPYSLRSLPM EPAQAAASGG 60 SGPAPFLLKT YDMVDDSATD EIVSWSASKN SFVVWNPPEF SRLLLPTYFK HNNFSSFIRQ 120 LNTYGFRKID PEKWEFHNDD FVKDQKHLLK NIHRRKPIHS HSNPQGSLPD SERAALDEEI 180 EKLSREKSQL EENISHCKQQ LMEKHQLENV SQRVNGIEKR QESLQSYLEK AVKDPAFVDF 240 LVQKIESMDF GAYNKKRRLP EVDYSQPAVE NGFVENQSSS RTEFGTIFHQ DFSSKLRLEL 300 SPAVSDIHLV SNSTQSSNED GEISIRKISE PELRGARVRT EGLFLAPEPL ELSDTGTSFG 360 FKMDSSLSRK QATNGTPGLR SLHPHLISSE EGDGQISCLL NLSLASSPFE GNHNNPYSAG 420 VSQLGQSIKK PLELRFGAIP KESDIRVSTM KKTVLDEGIN RSSSQEAANT NQGSVAAPGK 480 ANDGFWEQFL TERPGCSDNE EASSNYRDPN DGRLGNGLSR NSKNVEQLTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 5e-22 | 52 | 155 | 15 | 129 | Heat shock factor protein 1 |
5d5v_B | 5e-22 | 52 | 155 | 15 | 129 | Heat shock factor protein 1 |
5d5v_D | 5e-22 | 52 | 155 | 15 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010097956.1 | 0.0 | heat stress transcription factor A-5 | ||||
Swissprot | Q94BZ5 | 1e-153 | HSFA5_ARATH; Heat stress transcription factor A-5 | ||||
TrEMBL | W9RUK3 | 0.0 | W9RUK3_9ROSA; Heat stress transcription factor A-5 | ||||
STRING | XP_010097956.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4961 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13980.1 | 1e-155 | HSF family protein |
Publications ? help Back to Top | |||
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