PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK20762.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HSF
Protein Properties Length: 530aa    MW: 59093.9 Da    PI: 6.7146
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK20762.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.61.1e-34661562101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y++++d++++e++sws+++nsfvv+++ ef++ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F k++k+ll++i+
     PK20762.1  66 FLLKTYDMVDDSATDEIVSWSASKNSFVVWNPPEFSRLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEK---------WEFHNDDFVKDQKHLLKNIH 153
                   9********************999*****************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
     PK20762.1 154 RRK 156
                   *98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3756150IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.12E-3561155IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.3E-5962155IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-186689IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-3066155IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-18104116IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340105129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-18117129IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
QKKKKTKNPI LTPTPTPTPS PSPIPLIPSS NLIFKIQSQQ PPYSLRSLPM EPAQAAASGG  60
SGPAPFLLKT YDMVDDSATD EIVSWSASKN SFVVWNPPEF SRLLLPTYFK HNNFSSFIRQ  120
LNTYGFRKID PEKWEFHNDD FVKDQKHLLK NIHRRKPIHS HSNPQGSLPD SERAALDEEI  180
EKLSREKSQL EENISHCKQQ LMEKHQLENV SQRVNGIEKR QESLQSYLEK AVKDPAFVDF  240
LVQKIESMDF GAYNKKRRLP EVDYSQPAVE NGFVENQSSS RTEFGTIFHQ DFSSKLRLEL  300
SPAVSDIHLV SNSTQSSNED GEISIRKISE PELRGARVRT EGLFLAPEPL ELSDTGTSFG  360
FKMDSSLSRK QATNGTPGLR SLHPHLISSE EGDGQISCLL NLSLASSPFE GNHNNPYSAG  420
VSQLGQSIKK PLELRFGAIP KESDIRVSTM KKTVLDEGIN RSSSQEAANT NQGSVAAPGK  480
ANDGFWEQFL TERPGCSDNE EASSNYRDPN DGRLGNGLSR NSKNVEQLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-225215515129Heat shock factor protein 1
5d5v_B5e-225215515129Heat shock factor protein 1
5d5v_D5e-225215515129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097956.10.0heat stress transcription factor A-5
SwissprotQ94BZ51e-153HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLW9RUK30.0W9RUK3_9ROSA; Heat stress transcription factor A-5
STRINGXP_010097956.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-155HSF family protein
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]