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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK20698.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | WRKY | ||||||||
Protein Properties | Length: 119aa MW: 13434 Da PI: 9.9547 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.5 | 3.2e-29 | 65 | 118 | 3 | 55 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYege 55 D y+WrKYGqK++kgs++prsYY+C+s gCp++k+ver+ edp+++++tYeg+ PK20698.1 65 DDYSWRKYGQKPIKGSPYPRSYYKCSSLkGCPARKHVERCLEDPTMLVVTYEGD 118 99************************998***********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.9E-15 | 17 | 61 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 8.4E-31 | 51 | 118 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.37 | 58 | 119 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.63E-25 | 61 | 117 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-30 | 63 | 119 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.5E-24 | 65 | 117 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
XASEVSTSSI LSSKWMCGEK SEDTTSMKCV ASTGGCHCSK RRKLKKRRRI RVPSVSNKLA 60 DIPPDDYSWR KYGQKPIKGS PYPRSYYKCS SLKGCPARKH VERCLEDPTM LVVTYEGDX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-21 | 51 | 117 | 2 | 67 | WRKY transcription factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 42 | 50 | KLKKRRRIR |
2 | 45 | 49 | KRRRI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002268403.3 | 9e-59 | PREDICTED: probable WRKY transcription factor 21 | ||||
Swissprot | O04336 | 2e-50 | WRK21_ARATH; Probable WRKY transcription factor 21 | ||||
TrEMBL | A0A438ESI6 | 2e-57 | A0A438ESI6_VITVI; Putative WRKY transcription factor 21 | ||||
STRING | EOY24404 | 6e-56 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14424 | 13 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30590.1 | 4e-47 | WRKY DNA-binding protein 21 |