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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK20565.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | CO-like | ||||||||
Protein Properties | Length: 407aa MW: 43842.6 Da PI: 4.6394 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.6 | 7.9e-06 | 5 | 44 | 6 | 39 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +++++ +C+++ +lC +C + H+ H++ PK20565.1 5 CDYCGDQRSMVYCRSDAACLCLSCDRNVHSAnilskrHSR 44 *****************************65677777776 PP | |||||||
2 | zf-B_box | 21.6 | 4.7e-07 | 46 | 89 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 +C++++++++ C + ++ lC++C +H g H++++ PK20565.1 46 LICERCHSQPALVRCAEERVSLCQNCDWMGH-GastssstHKRQT 89 68*****************************.5588888888776 PP | |||||||
3 | CCT | 62 | 1.8e-21 | 350 | 393 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ a++RYkeK+k RkF+K++rY+sRKa+A+ R+RvKGrFvk+ PK20565.1 350 RNDAVMRYKEKKKMRKFDKRVRYASRKARADVRKRVKGRFVKAG 393 999**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.471 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.87E-7 | 4 | 47 | No hit | No description |
SMART | SM00336 | 2.5E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.702 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.69E-6 | 47 | 90 | No hit | No description |
SMART | SM00336 | 0.47 | 48 | 90 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 15.348 | 350 | 392 | IPR010402 | CCT domain |
Pfam | PF06203 | 3.4E-16 | 350 | 392 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MGYLCDYCGD QRSMVYCRSD AACLCLSCDR NVHSANILSK RHSRTLICER CHSQPALVRC 60 AEERVSLCQN CDWMGHGAST SSSTHKRQTI RSYSGCPSAA ELSSIWSSIL DSPTGGESTC 120 EQEMGLMSIN ENSSGNDPGP SENASGSVGV NSVTSMAKAS VWPSSSSVPE INAASQVLDL 180 PDESENATFP KLSFPGIKGP ALSANDDLYA DLDMDEVDLN FENYEELFGV ALNNSEELFE 240 NGGIDSLFEA TEMSGADSNC QSAVAAEGSV GQVNAMPACS NAASADSAMS TKTEPLLCFA 300 RQQSSLSFSG PNGETTAGDY QDCGASSMLL LGEPPWCPPS QDASLQSANR NDAVMRYKEK 360 KKMRKFDKRV RYASRKARAD VRKRVKGRFV KAGDVYDYDP LNQTRSC |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024028610.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Swissprot | Q9LUA9 | 1e-148 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | A0A2P5B617 | 0.0 | A0A2P5B617_PARAD; Zinc finger-domain containing protein | ||||
STRING | XP_010107355.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4362 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 1e-123 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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