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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PK20565.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family |
CO-like |
Protein Properties |
Length: 407aa MW: 43842.6 Da PI: 4.6394 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PK20565.1 | genome | CCBR | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 17.6 | 7.9e-06 | 5 | 44 | 6 | 39 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
C+ +++++ +C+++ +lC +C + H+ H++
PK20565.1 5 CDYCGDQRSMVYCRSDAACLCLSCDRNVHSAnilskrHSR 44
*****************************65677777776 PP
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2 | zf-B_box | 21.6 | 4.7e-07 | 46 | 89 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
+C++++++++ C + ++ lC++C +H g H++++
PK20565.1 46 LICERCHSQPALVRCAEERVSLCQNCDWMGH-GastssstHKRQT 89
68*****************************.5588888888776 PP
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3 | CCT | 62 | 1.8e-21 | 350 | 393 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
R+ a++RYkeK+k RkF+K++rY+sRKa+A+ R+RvKGrFvk+
PK20565.1 350 RNDAVMRYKEKKKMRKFDKRVRYASRKARADVRKRVKGRFVKAG 393
999**************************************975 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 407 aa
Download sequence Send
to blast |
MGYLCDYCGD QRSMVYCRSD AACLCLSCDR NVHSANILSK RHSRTLICER CHSQPALVRC 60 AEERVSLCQN CDWMGHGAST SSSTHKRQTI RSYSGCPSAA ELSSIWSSIL DSPTGGESTC 120 EQEMGLMSIN ENSSGNDPGP SENASGSVGV NSVTSMAKAS VWPSSSSVPE INAASQVLDL 180 PDESENATFP KLSFPGIKGP ALSANDDLYA DLDMDEVDLN FENYEELFGV ALNNSEELFE 240 NGGIDSLFEA TEMSGADSNC QSAVAAEGSV GQVNAMPACS NAASADSAMS TKTEPLLCFA 300 RQQSSLSFSG PNGETTAGDY QDCGASSMLL LGEPPWCPPS QDASLQSANR NDAVMRYKEK 360 KKMRKFDKRV RYASRKARAD VRKRVKGRFV KAGDVYDYDP LNQTRSC
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Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G48250.1 | 1e-123 | B-box type zinc finger protein with CCT domain |