PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK20553.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 91aa    MW: 10284.8 Da    PI: 5.5724
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK20553.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.90.000127582154
               HHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH 21 eeLrellPkaskapskKlsKaeiLekAveYIksL 54
                +L++llP +  ++ + +  ++iL +++ YI  L
  PK20553.1 27 LKLQSLLPLL--NTTPNVPASTILDETCTYIMRL 58
               68*******7..255559*************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.0E-72074IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-72174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSNHQTSSRS SSPFIKPTDD EIHHLVLKLQ SLLPLLNTTP NVPASTILDE TCTYIMRLRR  60
EVDSLSGKLS QLLNTAEIDD VDELIRKLLQ Q
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic bHLH transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. May be involved in the control of lamina inclination through brassinosteroid signaling pathway (By similarity). {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic bHLH transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. May be involved in the control of lamina inclination through brassinosteroid signaling pathway. {ECO:0000269|PubMed:22363621}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092048.17e-25transcription factor PRE4
SwissprotB8APB52e-11ILI6_ORYSI; Transcription factor ILI6
SwissprotQ0DUR22e-11ILI6_ORYSJ; Transcription factor ILI6
TrEMBLW9R0622e-23W9R062_9ROSA; Uncharacterized protein
STRINGXP_010092048.13e-24(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106242439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-09bHLH family protein