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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK20397.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | bHLH | ||||||||
Protein Properties | Length: 111aa MW: 12654.2 Da PI: 4.2608 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.9 | 5e-05 | 3 | 34 | 22 | 55 |
HHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 22 eLrellPk.askapskKlsKaeiLekAveYIksLq 55 +L+ellPk a + s +++ +++YIk+Lq PK20397.1 3 KLQELLPKsA---EGVGGSQVSVFDDVIDYIKYLQ 34 8*******55...8888*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 5.3E-5 | 2 | 43 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.23E-5 | 3 | 44 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
XNKLQELLPK SAEGVGGSQV SVFDDVIDYI KYLQLQIKDL SESRLGGESP TKPIIFREGY 60 GHYFYDQETL NEPLEEIIMA KWLEVNSLAV TNMLERKGLL LMPIEFTEAL Q |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015891593.1 | 8e-38 | uncharacterized protein LOC107426023 isoform X2 | ||||
Refseq | XP_024933181.1 | 9e-38 | uncharacterized protein LOC107426023 isoform X1 | ||||
TrEMBL | A0A2P5CS75 | 2e-40 | A0A2P5CS75_TREOI; Myc-type, basic helix-loop-helix (BHLH) domain containing protein | ||||
STRING | XP_010090380.1 | 3e-34 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12164 | 24 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30980.1 | 2e-14 | LJRHL1-like 2 |