PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK20243.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 98aa    MW: 11075.4 Da    PI: 9.7507
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK20243.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.85.9e-09955145
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     rg+WT    + + +a + + ++   +W  +a+ +g g+t++++k ++ 
        PK20243.1  9 RGSWTVKQNKAFEKALAVYDKDtpdRWYNVAKAVG-GKTPEEVKRHYE 55
                     89*********************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.175762IPR017884SANT domain
SMARTSM007171.4E-8860IPR001005SANT/Myb domain
SuperFamilySSF466896.36E-13966IPR009057Homeodomain-like
PfamPF002497.6E-7955IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-51164IPR009057Homeodomain-like
CDDcd001674.66E-61258No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MASSSISSRG SWTVKQNKAF EKALAVYDKD TPDRWYNVAK AVGGKTPEEV KRHYELLVED  60
VKHIESGQVP FPNYRTTGGS TQGSTNEDEK RMRNLKLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-44198193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010088924.16e-58protein RADIALIS-like 1
SwissprotF4JVB83e-45RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A2P5CA432e-56A0A2P5CA43_PARAD; Octamer-binding transcription factor
TrEMBLW9QGR51e-56W9QGR5_9ROSA; DnaJ homolog subfamily C member 2
STRINGXP_010088924.12e-57(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-47RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]