PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK20184.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 367aa    MW: 39450.4 Da    PI: 6.1766
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK20184.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.3e-10178222554
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                h+++Er RR+ri +++  L+el+P++      K + a++L + v+Y+k L
  PK20184.1 178 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 222
                99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.50E-10171227No hitNo description
SuperFamilySSF474591.44E-15171232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.526173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15175233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-7178222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-12179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MAGNPPENLG DDFLEQILAG QQSYTGGGGD MGSMPMVLQL GSGAGNVSGG SGPGGGYRGV  60
GMGMGMPLGL NLEQGFLRHD RFRDEVEVNN NNNNTNNLSS PVNATSAINE RDSVHMASLF  120
PAFGHLQNQS VRAAPPPPPP QLHQSYHVQP TPQVAPAPQP PTMRPRVRAR RGQATDPHSI  180
AERLRRERIA ERMKALQELV PSCNKTDRAA MLDEIVDYVK FLRLQVKVLS MSRLGGAGAV  240
AQLVADVPLS SVEGGGVEGG DSEAAWEKWS TDGTEQQVAK LMEEDVGAAM QFLQSKALCI  300
MPISLASAIF RTHQPDGPTM VKPESNIPPN ATNRKIPNPV VGLLSLMTFE YSVLLVPNSC  360
REREREX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182187RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875423.11e-156transcription factor UNE12-like isoform X1
SwissprotO227685e-79UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2P5DKN11e-150A0A2P5DKN1_PARAD; Basic helix-loop-helix transcription factor
STRINGEMJ066851e-143(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112053239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.39e-61bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]